Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2039 bp · TkA04G107480|TK1151|cDNA
CTCTCCAGCGAGCAAGAAGCTGAAGGAAAATGGCAGAGACACCACAACACATGGCCGGAAAAGACACGGGCTGTGGTTTCATAGGGGCCATTTTTAGTAACAAGCCCCGGAAAACAAGACCAGTACCACGACTCGAAGCCTCCAAAGAGCACCGGCAAACCCAATTTCCCAGCAACCATACTTCAAAAAGACCACCGCGAACCCACAGCCACACCATCACCACCACGGCTGCCACGGCCACAGAAATAGTATACACCGGC...
1791 bp · TkA04G107480|TK1151|CDS
ATGGCAGAGACACCACAACACATGGCCGGAAAAGACACGGGCTGTGGTTTCATAGGGGCCATTTTTAGTAACAAGCCCCGGAAAACAAGACCAGTACCACGACTCGAAGCCTCCAAAGAGCACCGGCAAACCCAATTTCCCAGCAACCATACTTCAAAAAGACCACCGCGAACCCACAGCCACACCATCACCACCACGGCTGCCACGGCCACAGAAATAGTATACACCGGCTTCTCAAAACCAGTTGCAAGAAATCCTCC...
Protein
Download Protein FASTA596 aa · TkA04G107480|TK1151|PROTEIN
MAETPQHMAGKDTGCGFIGAIFSNKPRKTRPVPRLEASKEHRQTQFPSNHTSKRPPRTHSHTITTTAATATEIVYTGFSKPVARNPPPPPPKTKLPIAVKRPPTTVKRPATVRSNTPVYSTYDSVSKSALYSVSQVTNITYTKQLRKEPSFTSSELSLRISVRGKTKPTGSTVSSYRASSNHVTVPGHLGNLMKRKPEKPQSHEKLGNVYGNSAKKWDSESFKNMGNEKYKQGMFDEAISLYTEAIGMDSTIASYYSNRS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G107480 |
|---|---|
| TK1151 ID | TkA04G107480 |
| OH-1004 ID | LXL04_035802 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G107480 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:27939230-27942386 (-) | |||||||||
| Description | Similar to TTL1: TPR repeat-containing thioredoxin TTL1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006457 protein folding Biological Process GO:0006950 response to stress Biological Process GO:0006970 response to osmotic stress Biological Process GO:0009555 pollen development Biological Process GO:0009651 response to salt stress Biological Process GO:0009733 response to auxin Biological Process GO:0009734 auxin-activated signaling pathway Biological Process GO:0009737 response to abscisic acid Biological Process GO:0009738 abscisic acid-activated signaling pathway Biological Process GO:0009742 brassinosteroid mediated signaling pathway Biological Process GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process GO:0010305 leaf vascular tissue pattern formation Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G53300 ath:AT2G42580 ath:AT3G14950 ath:AT3G58620 mmu:56354 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13431TPR_17195-215 aaPF13414TPR_11196-211 aaPF29407CFAP70_TPR_C213-305 aaPF13424TPR_12218-248 aaPF25575TPR_BSK1_C219-291 aaPF00515TPR_1220-249 aaPF07719TPR_2221-246 aaPF13424TPR_12223-248 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G107480 | PF13431 | TPR_17 | 195 | 215 | 1.7e-11 | 44.1 |
| TkA04G107480 | PF13414 | TPR_11 | 196 | 211 | 2.1e-16 | 60.0 |
| TkA04G107480 | PF29407 | CFAP70_TPR_C | 213 | 305 | 3.2e-06 | 27.6 |
| TkA04G107480 | PF13424 | TPR_12 | 218 | 248 | 5.7e-07 | 30.3 |
| TkA04G107480 | PF25575 | TPR_BSK1_C | 219 | 291 | 9.3e-10 | 39.1 |
| TkA04G107480 | PF00515 | TPR_1 | 220 | 249 | 5.9e-23 | 80.4 |
| TkA04G107480 | PF07719 | TPR_2 | 221 | 246 | 8.3e-19 | 66.8 |
| TkA04G107480 | PF13424 | TPR_12 | 223 | 248 | 5.7e-07 | 30.3 |
| TkA04G107480 | PF13181 | TPR_8 | 224 | 250 | 6.7e-09 | 35.9 |
| TkA04G107480 | PF13432 | TPR_16 | 225 | 286 | 5.4e-11 | 43.4 |
| TkA04G107480 | PF13414 | TPR_11 | 226 | 263 | 2.1e-16 | 60.0 |
| TkA04G107480 | PF13428 | TPR_14 | 228 | 246 | 0.00019 | 22.5 |
| TkA04G107480 | PF12895 | ANAPC3 | 230 | 250 | 8.2e-05 | 23.6 |
| TkA04G107480 | PF13174 | TPR_6 | 230 | 246 | 0.00046 | 21.4 |
| TkA04G107480 | PF14559 | TPR_19 | 231 | 250 | 4.1e-14 | 53.4 |
| TkA04G107480 | PF13176 | TPR_7 | 231 | 248 | 1.2e-05 | 25.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.