TkA04G035720 | RubberDandelionOmics

Gene overview

TkA04G035720

Reference: TK1151 Chr: Chr04 Coordinates: 9602073-9603469 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1302 bp · TkA04G035720|TK1151|cDNA

TTCAATCATCATGATTTAATTGTTGAAATTATTTTCCAGGCATTCTTTGGTGTTTTCGATGGCCATGGTGGATCAAAAGCCGCTGAATTTGCAGCAGAGAATCTCGATAAAAACATCTTAAACGAAGTAGAAAAAATGGGTGAAATCGAAATAATTGAAGCAATCAAACAAGGTTACATGAACACAGATTCCCAATTTCTAAAACAAGATCACCGCGGTGGATCTTGCTGCGTTACCGCCATTATCAGAGACAACAACCT...

CDS

Download CDS FASTA

720 bp · TkA04G035720|TK1151|CDS

TTCAATCATCATGATTTAATTGTTGAAATTATTTTCCAGGCATTCTTTGGTGTTTTCGATGGCCATGGTGGATCAAAAGCCGCTGAATTTGCAGCAGAGAATCTCGATAAAAACATCTTAAACGAAGTAGAAAAAATGGGTGAAATCGAAATAATTGAAGCAATCAAACAAGGTTACATGAACACAGATTCCCAATTTCTAAAACAAGATCACCGCGGTGGATCTTGCTGCGTTACCGCCATTATCAGAGACAACAACCT...

Protein

Download Protein FASTA

239 aa · TkA04G035720|TK1151|PROTEIN

FNHHDLIVEIIFQAFFGVFDGHGGSKAAEFAAENLDKNILNEVEKMGEIEIIEAIKQGYMNTDSQFLKQDHRGGSCCVTAIIRDNNLVVSNAGDCRAVLSSGGFATPLTSDHRPSRPDEKLRIESLGGYVDCSHGVPRVLGSLAVSRGIGDRSLKQWITAEPESKILKIVPEFEFLIIASDGLWDNVSNQEAVDLARPFCVSNDMVDGGLACKKLVELSASRGSVDDASVMIVNLGRFC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G035720`
TK1151 ID	TkA04G035720
OH-1004 ID	LXL04_000638
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	80.200
Protein coverage (%)	TK1151 94.979 / OH-1004 60.053 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G035720

Location Chr04:9602073-9603469 (-)

Description Similar to At2g30020: Probable protein phosphatase 2C 25

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g30020`	Protein phosphatase that negatively regulates defense respones.	No verified direct reference in this release
`At1g07160`	Probable protein phosphatase 2C 2.	No verified direct reference in this release
`At2g40180`	Probable protein phosphatase 2C 30.	No verified direct reference in this release
`At1g67820`	Probable protein phosphatase 2C 14.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0292100`	Probable protein phosphatase 2C 32.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000638 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0009620 response to fungus Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0010440 stomatal lineage progression Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G07160

ath:AT1G67820

ath:AT2G30020

ath:AT2G40180

dosa:Os03g0292100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.627

Rank 1 · TkA04G035720 · TK1151

Nucleus0.484

Rank 2 · TkA04G035720 · TK1151

Cell membrane0.067

Rank 3 · TkA04G035720 · TK1151

Mitochondrion0.058

Rank 4 · TkA04G035720 · TK1151

Endoplasmic reticulum0.049

Rank 5 · TkA04G035720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481PP2C14-227 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G035720	`PF00481`	PP2C	14	227	1.4e-53	183.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80871`	Arabidopsis thaliana	sp\|O80871\|P2C25_ARATH Probable protein phosphatase 2C 25	66.200%	Swiss-Prot	High
`Q8RX37`	Arabidopsis thaliana	sp\|Q8RX37\|P2C02_ARATH Probable protein phosphatase 2C 2	67.700%	Swiss-Prot	High
`Q9XEE8`	Arabidopsis thaliana	sp\|Q9XEE8\|P2C30_ARATH Probable protein phosphatase 2C 30	61.600%	Swiss-Prot	High
`Q9FXE4`	Arabidopsis thaliana	sp\|Q9FXE4\|P2C14_ARATH Probable protein phosphatase 2C 14	57.100%	Swiss-Prot	High
`Q10MX1`	Oryza sativa subsp. japonica	sp\|Q10MX1\|P2C32_ORYSJ Probable protein phosphatase 2C 32	56.500%	Swiss-Prot	High

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