TkA03G602110 | RubberDandelionOmics

Gene overview

TkA03G602110

Reference: TK1151 Chr: Chr03 Coordinates: 152921813-152924957 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1313 bp · TkA03G602110|TK1151|cDNA

AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGGTAATGGAGGAGCTAAGCCAATCAACAGTGACTCATCTTCTTCAACATACACTGAGAAGCTTTTGCATTCACGAAAACTCACAGTGGGTCTATGCTGTTTTCTGGAGGATCTTGCCCAGAAACTACCCTCCTCCCAAATGGGATACTCAAGGTGGGGCATATGATAGGTCAAGAGGCAACAGAAGAAACTGGATACTAGCAT...

CDS

Download CDS FASTA

1041 bp · TkA03G602110|TK1151|CDS

ATGGAGGAGCTAAGCCAATCAACAGTGACTCATCTTCTTCAACATACACTGAGAAGCTTTTGCATTCACGAAAACTCACAGTGGGTCTATGCTGTTTTCTGGAGGATCTTGCCCAGAAACTACCCTCCTCCCAAATGGGATACTCAAGGTGGGGCATATGATAGGTCAAGAGGCAACAGAAGAAACTGGATACTAGCATGGGAGGATGGTTTTTGTAATTTCGCAGCCTCAACTGCCGCAGAGACAAACTCCGGCGACTG...

Protein

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346 aa · TkA03G602110|TK1151|PROTEIN

MEELSQSTVTHLLQHTLRSFCIHENSQWVYAVFWRILPRNYPPPKWDTQGGAYDRSRGNRRNWILAWEDGFCNFAASTAAETNSGDCQPYSNHDYQQYHGLQPELFFKMSHEIYNYGEGLIGKVAADHNHKWIFKEPTDQEINFLSTWNNSADSHPRTWEAQFQAGIKTIALVAVREGVIQLGSIHKVIEDLSYVVMLRKKLSYIESIPGVLLPHPSSSLYPFRPEGYTTPEVWPFHGGSELPAAYNQPLNITPSMSSLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G602110`
TK1151 ID	TkA03G602110
OH-1004 ID	LXL04_011562
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G602110

Location Chr03:152921813-152924957 (-)

Description Similar to RSS3: Protein RICE SALT SENSITIVE 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g31280`	Transcription factor that may regulate root development.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0446000`	Involved in the repression of jasmonate (JA)-induced genes.	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation.2013 · DOI: 10.1105/tpc.113.112052

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011562 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0010078 maintenance of root meristem identity Biological Process

GO:0010089 xylem development Biological Process

GO:0010479 stele development Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G06150

ath:AT2G27230

ath:AT2G31280

dosa:Os11g0446000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.467

Rank 1 · TkA03G602110 · TK1151

Cytoplasm0.386

Rank 2 · TkA03G602110 · TK1151

Cell membrane0.262

Rank 3 · TkA03G602110 · TK1151

Endoplasmic reticulum0.064

Rank 4 · TkA03G602110 · TK1151

Lysosome / Vacuole0.062

Rank 5 · TkA03G602110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14215bHLH-MYC_N13-200 aa

PF14215bHLH-MYC_N302-322 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G602110	`PF14215`	bHLH-MYC_N	13	200	1.9e-32	113.7
TkA03G602110	`PF14215`	bHLH-MYC_N	302	322	1.9e-32	113.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q58G01`	Arabidopsis thaliana	sp\|Q58G01\|LHWL3_ARATH Transcription factor bHLH155	41.200%	Swiss-Prot	Low
`K4PW38`	Oryza sativa subsp. japonica	sp\|K4PW38\|RSS3_ORYSJ Protein RICE SALT SENSITIVE 3	35.500%	Swiss-Prot	Medium

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