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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G483360
Reference: TK1151 Chr: Chr03 Coordinates: 120899148-120900741 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1278 bp · TkA03G483360|TK1151|cDNA

ATATCTTCCTTGCGCCGATCATCTTACCTTGTGTATAGAAGAAAATAAATCCTCATCTTTCACGATAAAATCTTCTACTCTTGAGACGATCGCAGGTCCATTTCATAGAGGGAGCCGTCTCGATCTTCAAGTAAACCCCAAATCACCATGGCTTTGAAGTTTCTGAACAAGAAAGGTTGGCACACGGGTAGTCTGCGTAACATCGAAAACGTTTGGAAAGCCGAGCAGAAGCATGATGCCGAACAGAAGAAGCTTGAGGA...

CDS

Download CDS FASTA

969 bp · TkA03G483360|TK1151|CDS

ATGGCTTTGAAGTTTCTGAACAAGAAAGGTTGGCACACGGGTAGTCTGCGTAACATCGAAAACGTTTGGAAAGCCGAGCAGAAGCATGATGCCGAACAGAAGAAGCTTGAGGAACTCCGAAAGCAAATCCACGAGGAGAGGGAAAAAGCCGAATTCCGTCAACTTCAGGAACAGGCCGGCTTAGTTCCGAAGCAAGAACGATTGGATTTCTTATACGATTCTGGATTATCCTCAAGGAAGGACAGTTCAGATAGTGGATT...

Protein

Download Protein FASTA

322 aa · TkA03G483360|TK1151|PROTEIN

MALKFLNKKGWHTGSLRNIENVWKAEQKHDAEQKKLEELRKQIHEEREKAEFRQLQEQAGLVPKQERLDFLYDSGLSSRKDSSDSGFKALESLPPKAEPEASTSANKASQPGALFEDKPQSANDAWRKLHSDPLLLIKQREQEALARVKNNPVQMAMIRKSVEAKKQKEKKTSDDKKHHHKKSRHEKHTSSKHGTSSDDVAQKEEDRVKRRSPERYQKQHHRPPVHHRNSNVLSKEDRARKLKEMQMDAELHEEQRWKRL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G483360
TK1151 IDTkA03G483360
OH-1004 IDLXL04_009932
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G483360
LocationChr03:120899148-120900741 (-)
DescriptionSimilar to CWC25: Pre-mRNA-splicing factor CWC25 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009932 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0045292 mRNA cis splicing, via spliceosome Biological Process
GO:0000974 Prp19 complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005681 spliceosomal complex Cellular Component
GO:0005684 U2-type spliceosomal complex Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016607 nuclear speck Cellular Component
GO:0071006 U2-type catalytic step 1 spliceosome Cellular Component
KEGG gene cross-reference
ani:ANIA_05949
fgr:FGSG_00169
hsa:54883
mmu:67480
spo:2539683
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.949
Rank 1 · TkA03G483360 · TK1151
Cytoplasm0.150
Rank 2 · TkA03G483360 · TK1151
Cell membrane0.019
Rank 3 · TkA03G483360 · TK1151
Mitochondrion0.019
Rank 4 · TkA03G483360 · TK1151
Endoplasmic reticulum0.008
Rank 5 · TkA03G483360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10197Cir_N11-46 aa
PF12542CWC2524-42 aa
PF11897DUF341736-36 aa
PF10197Cir_N50-57 aa
PF12542CWC2564-152 aa
PF11897DUF3417123-180 aa
PF10197Cir_N140-146 aa
PF12542CWC25160-219 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G483360PF10197Cir_N11461.3e-1454.8
TkA03G483360PF12542CWC2524427.8e-1556.3
TkA03G483360PF11897DUF341736360.03515.3
TkA03G483360PF10197Cir_N50571.3e-1454.8
TkA03G483360PF12542CWC25641527.8e-1556.3
TkA03G483360PF11897DUF34171231800.03515.3
TkA03G483360PF10197Cir_N1401461.3e-1454.8
TkA03G483360PF12542CWC251602197.8e-1556.3
TkA03G483360PF10197Cir_N1631711.3e-1454.8
TkA03G483360PF10197Cir_N2022101.3e-1454.8
TkA03G483360PF10197Cir_N2402471.3e-1454.8
TkA03G483360PF11897DUF34172442520.03515.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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