TkA03G348550 | RubberDandelionOmics

Gene overview

TkA03G348550

Reference: TK1151 Chr: Chr03 Coordinates: 85785540-85786382 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

612 bp · TkA03G348550|TK1151|cDNA

ATGAACACGAAGTTTTGTTATTACAACAACTCGAACGTGAACCAGCCTCGACATTTTTGCAAGAGCTGCCAGAGGTACTGGACTGCCGGAGGCACGATGAGGCACATGCCAGTCGGAGCAGGTCGCCGGAAGAAAAAGAACTCAACTTCGGATTGTCGGTTCATCATCTCCCACGAAGGTTTTGAATCCGGACCTCAGATTGAATTCGCTCCAGGGACTCCTTGGTCGTACAATCCATGGGTTCCGATGCCGGGATACCC...

CDS

Download CDS FASTA

612 bp · TkA03G348550|TK1151|CDS

ATGAACACGAAGTTTTGTTATTACAACAACTCGAACGTGAACCAGCCTCGACATTTTTGCAAGAGCTGCCAGAGGTACTGGACTGCCGGAGGCACGATGAGGCACATGCCAGTCGGAGCAGGTCGCCGGAAGAAAAAGAACTCAACTTCGGATTGTCGGTTCATCATCTCCCACGAAGGTTTTGAATCCGGACCTCAGATTGAATTCGCTCCAGGGACTCCTTGGTCGTACAATCCATGGGTTCCGATGCCGGGATACCC...

Protein

Download Protein FASTA

203 aa · TkA03G348550|TK1151|PROTEIN

MNTKFCYYNNSNVNQPRHFCKSCQRYWTAGGTMRHMPVGAGRRKKKNSTSDCRFIISHEGFESGPQIEFAPGTPWSYNPWVPMPGYPPIQFYPSPYWNSVPFSHLGKHSSDRESIKPNEEPKKQKNSVLIPKTLRIDDPDEAAKSSIWATLGIKNENSSRRDVFEGFKAKGDEKEKHMVNEASLLLQANPAAFSRSLYFQERS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G348550`
TK1151 ID	TkA03G348550
OH-1004 ID	LXL04_030633
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	53.700
Protein coverage (%)	TK1151 99.015 / OH-1004 71.856 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G348550

Location Chr03:85785540-85786382 (+)

Description Similar to CDF1: Cyclic dof factor 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g62430`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At3g47500`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	No verified direct reference in this release
`At5g39660`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response.2009 · DOI: 10.1016/j.devcel.2009.06.015
`At1g29160`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At2g34140`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030633 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009908 flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0048577 negative regulation of short-day photoperiodism, flowering Biological Process

GO:0048579 negative regulation of long-day photoperiodism, flowering Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G69570

ath:AT3G47500

ath:AT5G39660

ath:AT5G62430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.799

Rank 1 · TkA03G348550 · TK1151

Cytoplasm0.276

Rank 2 · TkA03G348550 · TK1151

Cell membrane0.038

Rank 3 · TkA03G348550 · TK1151

Mitochondrion0.035

Rank 4 · TkA03G348550 · TK1151

Endoplasmic reticulum0.025

Rank 5 · TkA03G348550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02701Zn_ribbon_Dof1-47 aa

PF04032Rpr215-47 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G348550	`PF02701`	Zn_ribbon_Dof	1	47	4.9e-25	88.2
TkA03G348550	`PF04032`	Rpr2	15	47	0.14	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8W1E3`	Arabidopsis thaliana	sp\|Q8W1E3\|CDF1_ARATH Cyclic dof factor 1	45.000%	Swiss-Prot	Medium
`Q8LFV3`	Arabidopsis thaliana	sp\|Q8LFV3\|CDF3_ARATH Cyclic dof factor 3	36.700%	Swiss-Prot	Medium
`Q93ZL5`	Arabidopsis thaliana	sp\|Q93ZL5\|CDF2_ARATH Cyclic dof factor 2	34.500%	Swiss-Prot	Medium
`P68350`	Arabidopsis thaliana	sp\|P68350\|DOF15_ARATH Dof zinc finger protein DOF1.5	80.400%	Swiss-Prot	Low
`O22967`	Arabidopsis thaliana	sp\|O22967\|CDF4_ARATH Cyclic dof factor 4	78.300%	Swiss-Prot	Low

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