TkA03G259820 | RubberDandelionOmics

Gene overview

TkA03G259820

Reference: TK1151 Chr: Chr03 Coordinates: 64420245-64422468 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

726 bp · TkA03G259820|TK1151|cDNA

CCTCTTCTGAAATCGATTTCAAGGTCCTCTCCTAAAGGCGATTTGAAATCTGCCTTTACCTGTCGCCATCTCTCCGGCCACCAGCGCCACCGCTCTCCGCCCACCTACGCCTTCACCGTCGGTTTACTTTGTTTCCTTGAGCTCCGACGCCTTCACAGTTGTTCCTCATCTCGATTTTGCGGTAGGTTGTTCTTCCTCATCTCGATTGTTCTTCACAGTTGTTTGATTTCTCATCTCGAATTCTCGATTGTCCGTAGGTT...

CDS

Download CDS FASTA

726 bp · TkA03G259820|TK1151|CDS

CCTCTTCTGAAATCGATTTCAAGGTCCTCTCCTAAAGGCGATTTGAAATCTGCCTTTACCTGTCGCCATCTCTCCGGCCACCAGCGCCACCGCTCTCCGCCCACCTACGCCTTCACCGTCGGTTTACTTTGTTTCCTTGAGCTCCGACGCCTTCACAGTTGTTCCTCATCTCGATTTTGCGGTAGGTTGTTCTTCCTCATCTCGATTGTTCTTCACAGTTGTTTGATTTCTCATCTCGAATTCTCGATTGTCCGTAGGTT...

Protein

Download Protein FASTA

241 aa · TkA03G259820|TK1151|PROTEIN

PLLKSISRSSPKGDLKSAFTCRHLSGHQRHRSPPTYAFTVGLLCFLELRRLHSCSSSRFCGRLFFLISIVLHSCLISHLEFSIVRRLFFLISILPSQNRRLHRTDAVQLWNNNLWTVKVMLSKKRTQKLKDKRKVVRAYASNKPWLIGFLMDIFGALLMLRALSLAPEVMNDVDWLGITLAGLGTIGVVAGGEEQKASSISILHLPWVACGVAFLFVGTSEWMASYLQTSTKRARVCLVLF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G259820`
TK1151 ID	TkA03G259820
OH-1004 ID	LXL04_005581
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	70.600
Protein coverage (%)	TK1151 39.419 / OH-1004 31.818 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G259820

Location Chr03:64420245-64422468 (+)

Description Similar to At5g11960: Probable magnesium transporter NIPA9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g11960`	Acts as a Mg(2+) transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005581 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015693 magnesium ion transport Biological Process

GO:0005769 early endosome Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0015095 magnesium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT5G11960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.253

Rank 1 · TkA03G259820 · TK1151

Nucleus0.234

Rank 2 · TkA03G259820 · TK1151

Endoplasmic reticulum0.225

Rank 3 · TkA03G259820 · TK1151

Cytoplasm0.162

Rank 4 · TkA03G259820 · TK1151

Cell membrane0.138

Rank 5 · TkA03G259820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF2612712TM_Mok13107-160 aa

PF17569DUF5475112-139 aa

PF10942DUF2619195-220 aa

PF2612712TM_Mok13197-226 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G259820	`PF26127`	12TM_Mok13	107	160	0.011	15.2
TkA03G259820	`PF17569`	DUF5475	112	139	0.061	14.4
TkA03G259820	`PF10942`	DUF2619	195	220	0.35	11.7
TkA03G259820	`PF26127`	12TM_Mok13	197	226	0.011	15.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8RWH8`	Arabidopsis thaliana	sp\|Q8RWH8\|NIPA9_ARATH Probable magnesium transporter NIPA9	56.000%	Swiss-Prot	Low

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