TkA03G035770 | RubberDandelionOmics

Gene overview

TkA03G035770

Reference: TK1151 Chr: Chr03 Coordinates: 9422273-9423502 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1013 bp · TkA03G035770|TK1151|cDNA

TTATTTTTCATGACAATGTTTTCCTCAAACCCTTTTCCCGAGCTTCCGTCGTACCCCGATAATCTCATTTTTCCACCCAATTTTCTCTTTCACCATGAAAATGATAGTGCTTTCTTTAACTACCACCTGAATAACAGAGACCCACTTATCTCCGGCGACTGTCTTCATGATATCAGTCTTGCTACTCCTTCTCCGGTCATACCTACCACTTCTACAATCGAAGAAGATTTTAGTTGGCAGCAGCAGCAGGTTTTTGAAGA...

CDS

Download CDS FASTA

861 bp · TkA03G035770|TK1151|CDS

ATGACAATGTTTTCCTCAAACCCTTTTCCCGAGCTTCCGTCGTACCCCGATAATCTCATTTTTCCACCCAATTTTCTCTTTCACCATGAAAATGATAGTGCTTTCTTTAACTACCACCTGAATAACAGAGACCCACTTATCTCCGGCGACTGTCTTCATGATATCAGTCTTGCTACTCCTTCTCCGGTCATACCTACCACTTCTACAATCGAAGAAGATTTTAGTTGGCAGCAGCAGCAGGTTTTTGAAGATCATGACGA...

Protein

Download Protein FASTA

286 aa · TkA03G035770|TK1151|PROTEIN

MTMFSSNPFPELPSYPDNLIFPPNFLFHHENDSAFFNYHLNNRDPLISGDCLHDISLATPSPVIPTTSTIEEDFSWQQQQVFEDHDDLLDSVIASYKKTTAVSKKAGHSKIYTGRGLRDRRVRLSIDISRKFFCLQDLLGFDKASKTLDWLFGKCKTSIQELVKETNRCPSSTTTFQSKTSFLEAIMEGGDEGKSKKKSQLKYVEDKRKKVAENPTGGFQDNLAKDQSRAVARARARERAREKMRIRKLDDELKTLANDH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G035770`
TK1151 ID	TkA03G035770
OH-1004 ID	LXL04_006424
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.300
Protein coverage (%)	TK1151 100.000 / OH-1004 90.794 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G035770

Location Chr03:9422273-9423502 (+)

Description Similar to TB1: Transcription factor TEOSINTE BRANCHED 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67260`	Involved in petal morphogenesis.	Control of corolla monosymmetry in the Brassicaceae Iberis amara.2007 · DOI: 10.1073/pnas.0705338104

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006424 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009799 specification of symmetry Biological Process

GO:0009908 flower development Biological Process

GO:0048262 determination of dorsal/ventral asymmetry Biological Process

GO:0048831 regulation of shoot system development Biological Process

GO:2000032 regulation of secondary shoot formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

dosa:Os03g0706500

osa:4333856

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.964

Rank 1 · TkA03G035770 · TK1151

Cytoplasm0.106

Rank 2 · TkA03G035770 · TK1151

Cell membrane0.031

Rank 3 · TkA03G035770 · TK1151

Endoplasmic reticulum0.021

Rank 4 · TkA03G035770 · TK1151

Plastid0.013

Rank 5 · TkA03G035770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03634TCP103-245 aa

PF15343DEPP127-207 aa

PF08972DUF1902138-181 aa

PF15343DEPP193-256 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G035770	`PF03634`	TCP	103	245	4.8e-35	122.1
TkA03G035770	`PF15343`	DEPP	127	207	0.049	14.4
TkA03G035770	`PF08972`	DUF1902	138	181	0.16	12.8
TkA03G035770	`PF15343`	DEPP	193	256	0.049	14.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FYG7`	Arabidopsis thaliana	sp\|Q9FYG7\|TCP1_ARATH Transcription factor TCP1	62.000%	Swiss-Prot	Low

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