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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G318540
Reference: TK1151 Chr: Chr02 Coordinates: 80909663-80917970 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5078 bp · TkA02G318540|TK1151|cDNA

GCTCTATAATGCACAAATGATTGTGTATGACAAAAAACTGTTGTACACAAATCAGTTCCCAATTTATTATATTACGATAACACATAGTGAATGGTCGATGACCATCTCCGTACGTACTTTCTTATATATAAGATAATTATTCACAAACTTTATATAGTTCAGAATCTCTCTCCAACTCTGTATCATAACCAGACCATTCATTCATTCATTCATTCGGGTCAAGAACCATTAAGTCAAGCATTAAGATGCTTTTGAAGAGA...

CDS

Download CDS FASTA

4473 bp · TkA02G318540|TK1151|CDS

ATGCGTTCTAAAGCTATGGAGGTCATAAAAGGTTCGAACATTTCTGAGTTTTGGACACCATGGATGCAGCCAGGCTCGCCCTGTTTGTGGGAAATCGCCAGCATTATCCTCCAACTTGGGTTCCTTGCGGTCCTATTAATCGGCCTTTTAAAACGACTCATTGAGCCACGGTCCACCCACAAACCAAAAGCCATGACCCCCGACCGGTACCCAACCAACATCAAAACTGGTCTCTCCTACAAACTAAGTCTAGTATGCTC...

Protein

Download Protein FASTA

1490 aa · TkA02G318540|TK1151|PROTEIN

MRSKAMEVIKGSNISEFWTPWMQPGSPCLWEIASIILQLGFLAVLLIGLLKRLIEPRSTHKPKAMTPDRYPTNIKTGLSYKLSLVCSILLLGTHIMVPLTFTTRNKAHCEFEIPILSSEIMQMISWVMTLIAIYLIPKRQKVDFPWIIRVWWLCTFLLTTSRFTLDVHFLVLNHGHPGLLEYIDLVSVLSSTCLLFIAIKGKTGLTVADPSAITEPFLHGNDHKKQEKLECPYGKASIFQLITFSWLNPLFVVGIKKPLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G318540
TK1151 IDTkA02G318540
OH-1004 IDLXL04_015541
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G318540
LocationChr02:80909663-80917970 (+)
DescriptionSimilar to ABCC9: ABC transporter C family member 9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g60160 Pump for glutathione S-conjugates. No verified direct reference in this release
At3g60970 Pump for glutathione S-conjugates. No verified direct reference in this release
At1g04120 Pump for glutathione S-conjugates.
The Arabidopsis thaliana ABC transporter AtMRP5 controls root development and stomata movement.2001 · DOI: 10.1093/emboj/20.8.1875
The plant multidrug resistance ABC transporter AtMRP5 is involved in guard cell hormonal signalling and water use.2003 · DOI: 10.1046/j.1365-313x.2003.016012.x
Binding of sulfonylurea by AtMRP5, an Arabidopsis multidrug resistance-related protein that functions in salt tolerance.2004 · DOI: 10.1104/pp.103.027045
The Arabidopsis ATP-binding cassette protein AtMRP5/AtABCC5 is a high affinity inositol hexakisphosphate transporter involved in guard cell signaling and phytate storage.2009 · DOI: 10.1074/jbc.m109.030247
At3g13080 Pump for glutathione S-conjugates.
An ABC-transporter of Arabidopsis thaliana has both glutathione-conjugate and chlorophyll catabolite transport activity.1998 · DOI: 10.1046/j.1365-313x.1998.00076.x

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XCD4 ABC transporter that may affect phytic acid transport and compartmentalization. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015541 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009624 response to nematode Biological Process
GO:0009651 response to salt stress Biological Process
GO:0030007 intracellular potassium ion homeostasis Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005774 vacuolar membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0048046 apoplast Cellular Component
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G04120
ath:AT3G13080
ath:AT3G60160
ath:AT3G60970
zma:100125659
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.451
Rank 1 · TkA02G318540 · TK1151
Lysosome / Vacuole0.266
Rank 2 · TkA02G318540 · TK1151
Cytoplasm0.174
Rank 3 · TkA02G318540 · TK1151
Endoplasmic reticulum0.138
Rank 4 · TkA02G318540 · TK1151
Golgi apparatus0.098
Rank 5 · TkA02G318540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00664ABC_membrane304-571 aa
PF08477Roc484-509 aa
PF02463SMC_N586-811 aa
PF20703nSTAND1632-674 aa
PF03193RsgA_GTPase634-671 aa
PF03308MeaB635-667 aa
PF00005ABC_tran636-770 aa
PF00158Sigma54_activat637-668 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G318540PF00664ABC_membrane3045713.9e-60204.6
TkA02G318540PF08477Roc4845091.49.9
TkA02G318540PF02463SMC_N5868116.4e-0833.0
TkA02G318540PF20703nSTAND16326740.005617.1
TkA02G318540PF03193RsgA_GTPase6346710.0002121.9
TkA02G318540PF03308MeaB6356670.01714.9
TkA02G318540PF00005ABC_tran6367709.2e-48163.0
TkA02G318540PF00158Sigma54_activat6376680.02315.1
TkA02G318540PF12775AAA_76396720.005816.9
TkA02G318540PF02367TsaE6416690.2711.9
TkA02G318540PF09818ABC_ATPase6416661.68.4
TkA02G318540PF13555AAA_296426631.3e-0732.0
TkA02G318540PF20693YobI-ATPase6456800.01615.5
TkA02G318540PF01935DUF876476730.0003721.4
TkA02G318540PF00009GTP_EFTU6476720.04114.2
TkA02G318540PF00437T2SSE6476700.07112.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M1C7Arabidopsis thalianasp|Q9M1C7|AB9C_ARATH ABC transporter C family member 962.800%Swiss-ProtHigh
Q7FB56Arabidopsis thalianasp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 1567.900%Swiss-ProtHigh
Q7GB25Arabidopsis thalianasp|Q7GB25|AB5C_ARATH ABC transporter C family member 549.000%Swiss-ProtMedium
Q9LK64Arabidopsis thalianasp|Q9LK64|AB3C_ARATH ABC transporter C family member 349.900%Swiss-ProtMedium
A2XCD4Oryza sativa subsp. indicasp|A2XCD4|AB13C_ORYSI ABC transporter C family member 1351.200%Swiss-ProtHigh

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