TkA01G623170 | RubberDandelionOmics

Gene overview

TkA01G623170

Reference: TK1151 Chr: Chr01 Coordinates: 157290223-157298124 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5527 bp · TkA01G623170|TK1151|cDNA

GTGAGGATGGCCCTTGGTGTCACCATATGGACAGGTTACATGTGTCCACCTCTGCATCCATTTCACATCCATGAAGTAAACATCATCAAGGAACAAGCTTTGTAAAAGAGAGATAGAGCTGCGGGTGGCTCCAACTTCCCTTCCATTTTATCTTCACATCCCTCATTCTCTCCCATTCTCCACACGATCTTCCCCCCCTTTTCTCTCTCTCTCCCTCTATTGTCACTCTTCATACTTACACCTACATGTTCTTGTTCTTC...

CDS

Download CDS FASTA

4872 bp · TkA01G623170|TK1151|CDS

ATGTCTCTTCAGCCTGTAGCTCATGTTAATGGCTACTATTTAAAACCCACATCTGTTTTCGCTTCCAAACGGGACTTTCTGTTTCTCGATTTTGTAGGTTTGGGCGCTAAACGGACTAATCGGAGATTGCTTGGAGCTGGTGCGAGTGTTCTCAAGAGTGTTGGAGGGTTCCCGAAGAAGAGGAACTGGCCGTCTTCAATCAAATCGGTTCTCGATTTTGATCGCGTTGATCATGTAGACGCCGACGCCCAACAATCTTC...

Protein

Download Protein FASTA

1623 aa · TkA01G623170|TK1151|PROTEIN

MSLQPVAHVNGYYLKPTSVFASKRDFLFLDFVGLGAKRTNRRLLGAGASVLKSVGGFPKKRNWPSSIKSVLDFDRVDHVDADAQQSSDSKRKVANLEDILAQRGSCGVGFIANLDNKGSHQIVEDALTALGCMEHRGGCGADNDSGDGAGLMTSIPWEFFNDWADKQGIAPFDQLHTGVGMVFLPNDESLVEQAKSIIVNIFNQEGLEVLAWRSVPVNAPIVGFYARETMPNIQQVFVRIIKEDDTDDIERELYICRKLI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G623170`
TK1151 ID	TkA01G623170
OH-1004 ID	LXL04_000283
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 99.571 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G623170

Location Chr01:157290223-157298124 (+)

Description Similar to GLU1: Ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g04140`	Involved in glutamate biosynthesis in leaf.	Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.1998 · DOI: 10.1105/tpc.10.5.741
`At2g41220`	May play a role in primary nitrogen assimilation in roots.	Assimilation of excess ammonium into amino acids and nitrogen translocation in Arabidopsis thaliana--roles of glutamate synthases and carbamoylphosphate synthetase in leaves.2009 · DOI: 10.1111/j.1742-4658.2009.07114.x Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.1998 · DOI: 10.1105/tpc.10.5.741

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0658400`	Involved in glutamate biosynthesis in leaf.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000283 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006537 glutamate biosynthetic process Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009853 photorespiration Biological Process

GO:0019676 ammonia assimilation cycle Biological Process

GO:0097054 L-glutamate biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

KEGG gene cross-reference

ath:AT2G41220

ath:AT5G04140

dosa:Os07g0658400

zma:542710

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.411

Rank 1 · TkA01G623170 · TK1151

Plastid0.235

Rank 2 · TkA01G623170 · TK1151

Nucleus0.164

Rank 3 · TkA01G623170 · TK1151

Mitochondrion0.124

Rank 4 · TkA01G623170 · TK1151

Peroxisome0.090

Rank 5 · TkA01G623170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00310GATase_2106-528 aa

PF04898Glu_syn_central554-847 aa

PF01645Glu_synthase726-754 aa

PF01645Glu_synthase907-1290 aa

PF01070FMN_dh1152-1235 aa

PF04898Glu_syn_central1185-1223 aa

PF01070FMN_dh1277-1296 aa

PF01493GXGXG1356-1596 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G623170	`PF00310`	GATase_2	106	528	2.6e-178	593.8
TkA01G623170	`PF04898`	Glu_syn_central	554	847	4.2e-109	365.1
TkA01G623170	`PF01645`	Glu_synthase	726	754	1.6e-156	521.9
TkA01G623170	`PF01645`	Glu_synthase	907	1290	1.6e-156	521.9
TkA01G623170	`PF01070`	FMN_dh	1152	1235	0.0012	18.7
TkA01G623170	`PF04898`	Glu_syn_central	1185	1223	4.2e-109	365.1
TkA01G623170	`PF01070`	FMN_dh	1277	1296	0.0012	18.7
TkA01G623170	`PF01493`	GXGXG	1356	1596	4.9e-101	337.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZNZ7`	Arabidopsis thaliana	sp\|Q9ZNZ7\|GLTB1_ARATH Ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial	82.600%	Swiss-Prot	High
`Q9T0P4`	Arabidopsis thaliana	sp\|Q9T0P4\|GLTB2_ARATH Ferredoxin-dependent glutamate synthase 2, chloroplastic	80.400%	Swiss-Prot	High
`Q69RJ0`	Oryza sativa subsp. japonica	sp\|Q69RJ0\|GLTB_ORYSJ Ferredoxin-dependent glutamate synthase, chloroplastic	81.500%	Swiss-Prot	High

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