TkA01G616800 | RubberDandelionOmics

Gene overview

TkA01G616800

Reference: TK1151 Chr: Chr01 Coordinates: 155604284-155605641 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1168 bp · TkA01G616800|TK1151|cDNA

GGAAGTTTTAGTGGAAACATTGTGTGGTCGTGTGTTCGCATTTTTTTTCCTTTAAATAGCAAGTCATTATCAGTATTGTAATTATCCCTTCCTTAATGTAAGTCTTTTAGTAGTTCTTTTTCTCCTGCAACTCAGATTACCTTTGTTTTCTTTCACTTTTCATAAATCCCTTCTTTATATTATACGTGAGCTTGTGTGAGTATAGTATCTTGAGGCTTTGAAAACTACGATTGTTACGTTTATCAAATTCTCAAATATAA...

CDS

Download CDS FASTA

624 bp · TkA01G616800|TK1151|CDS

ATGGCGATCAACGGTAACGACGATACCCAGACAATGTACGTCTCTTTCTACGACGACAACATCTTCACCACCGTAACCAAAGACCATAGGTATGTCACCGCCTGGATCTCTGAAACCACTGCGAATATCAACCGCCACCGTCAAATAATCGGCCTAGACGTTGAATGGCGCCCTTCCTACCAGCGAGGAGTTGAAAACCCCATTGCCATCTTACAGTTATGCGTCGGCCACCGCTGTCTCATCTTTCAAATCATCCACGC...

Protein

Download Protein FASTA

207 aa · TkA01G616800|TK1151|PROTEIN

MAINGNDDTQTMYVSFYDDNIFTTVTKDHRYVTAWISETTANINRHRQIIGLDVEWRPSYQRGVENPIAILQLCVGHRCLIFQIIHARYIPPSLFNFLNNPNYTFTGAGIHVDVEKLVQYYGLGGADNGRRLAADVVDLVGQAVQIYGMSVNGLGLKALARMFLGKEPEKPKRVTTSNWENYRLSDEQIDYASIDAFLSFQIGMVLI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G616800`
TK1151 ID	TkA01G616800
OH-1004 ID	LXL04_000372
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G616800

Location Chr01:155604284-155605641 (-)

Description Similar to WEX: Werner Syndrome-like exonuclease

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g13870`	Exonuclease that digests recessed strands of DNA duplexes in the 3' to 5' direction but hardly single-stranded DNA or blunt-ended duplexes.	Biochemical characterization of an exonuclease from Arabidopsis thaliana reveals similarities to the DNA exonuclease of the human Werner syndrome protein.2003 · DOI: 10.1074/jbc.m303891200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000372 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000723 telomere maintenance Biological Process

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0000731 DNA synthesis involved in DNA repair Biological Process

GO:0006139 nucleobase-containing compound metabolic process Biological Process

GO:0006259 DNA metabolic process Biological Process

GO:0006260 DNA replication Biological Process

GO:0006284 base-excision repair Biological Process

GO:0006298 mismatch repair Biological Process

GO:0006302 double-strand break repair Biological Process

GO:0006974 DNA damage response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0008340 determination of adult lifespan Biological Process

KEGG gene cross-reference

ath:AT4G13870

dme:Dmel_CG6744

hsa:7486

mmu:22427

vg:9925052

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.621

Rank 1 · TkA01G616800 · TK1151

Nucleus0.491

Rank 2 · TkA01G616800 · TK1151

Cell membrane0.088

Rank 3 · TkA01G616800 · TK1151

Endoplasmic reticulum0.060

Rank 4 · TkA01G616800 · TK1151

Mitochondrion0.033

Rank 5 · TkA01G616800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01612DNA_pol_A_exo147-202 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G616800	`PF01612`	DNA_pol_A_exo1	47	202	1.3e-11	45.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84LH3`	Arabidopsis thaliana	sp\|Q84LH3\|WEX_ARATH 3'-5' exonuclease	36.500%	Swiss-Prot	Medium

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