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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G602320
Reference: TK1151 Chr: Chr01 Coordinates: 151758482-151762472 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1914 bp · TkA01G602320|TK1151|cDNA

AAGACACGTAGACCCTCTCACATATAAACGGATGCAAACCTATTTATATTCCCCTCTTTATTCCCATTTCTGTTCCGCACCCCCAATCTCTCCATCGTTTCACCGCCGTTCTCCTCCACCATTTCCAAGCCCTAAACCTTTTCGAATCTCCAATTCACCATCTTTACATCCAATTTCTACTACCTAGGGTTTTTCCGTCAGCCGGGGGATTTCAAGGATCGGGGAAATGGCAAGTTCGACGACCAGCACTGTCTATATCA...

CDS

Download CDS FASTA

402 bp · TkA01G602320|TK1151|CDS

ATGATGCAAGCTGGGGCTATAGTGGGTCCGATTGACAGATCTGCTGTCGCTAAGTCGATGCCCCTGGGGCAACATCGAACACTGTTCACGATCTTAATGTGCCATATGAAGGACCGGAAGAGTATGAAACTCCCACCGCTGATTTACTTTTCCCTCCGCACACCAATGCAGACTCCAATGCAAACACCTTTGCCTGTTCAAACACCATTACCAGGAACAGCTCCAACACCTTTACCAGGGACCATGGACAATTACAACAT...

Protein

Download Protein FASTA

133 aa · TkA01G602320|TK1151|PROTEIN

MMQAGAIVGPIDRSAVAKSMPLGQHRTLFTILMCHMKDRKSMKLPPLIYFSLRTPMQTPMQTPLPVQTPLPGTAPTPLPGTMDNYNIPTGGTPITPSDYPSINDNGVSDGKAGRPSTYMASSSFLSSSLLIQE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G602320
TK1151 IDTkA01G602320
OH-1004 IDLXL04_000568
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)73.700
Protein coverage (%)TK1151 100.000 / OH-1004 32.282
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G602320
LocationChr01:151758482-151762472 (-)
DescriptionSimilar to GTF2A1: Transcription initiation factor IIA subunit 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000568 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006366 transcription by RNA polymerase II Biological Process
GO:0006367 transcription initiation at RNA polymerase II promoter Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0051123 RNA polymerase II preinitiation complex assembly Biological Process
GO:0060261 positive regulation of transcription initiation by RNA polymerase II Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005669 transcription factor TFIID complex Cellular Component
GO:0005672 transcription factor TFIIA complex Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0097550 transcription preinitiation complex Cellular Component
KEGG gene cross-reference
ddi:DDB_G0290327
hsa:2957
mmu:83602
pon:100172100
rno:83830
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.464
Rank 1 · TkA01G602320 · TK1151
Cytoplasm0.364
Rank 2 · TkA01G602320 · TK1151
Mitochondrion0.110
Rank 3 · TkA01G602320 · TK1151
Cell membrane0.089
Rank 4 · TkA01G602320 · TK1151
Extracellular0.077
Rank 5 · TkA01G602320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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