Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2528 bp · TkA01G590490|TK1151|cDNA
TTCGCTATTGACTTTGTTGGACTTCTGAAAGCAACCAAGAGAGAGAAACGACCGAGGGAGACGATGAAGAAATCAAGCAAAGGGGGAAAAAGGGATCTGAAAAATTGAAGTTATTGGAGTACAGAATGGATGGAGTAGCTGAAGGACTGTGGGAATTAGCGGATTTCCACGAGAAAAATGGCGAAATTGCGAAATCAATCAAGTGTCTTGAAGCCATTTGTCAAAGTACTGTCTCGTTTCTTCCCGTTATCGAAGTCAAA...
2139 bp · TkA01G590490|TK1151|CDS
ATGGATGGAGTAGCTGAAGGACTGTGGGAATTAGCGGATTTCCACGAGAAAAATGGCGAAATTGCGAAATCAATCAAGTGTCTTGAAGCCATTTGTCAAAGTACTGTCTCGTTTCTTCCCGTTATCGAAGTCAAAACTCGTCTTAGAATCGCTACTATGCTCCTCAAGCATTCTCAGAACCAACTACTCTTAAAATCGATTCCCTCATGCTTCGAGTTGAAGTGCAGAGCTTTTAGCTTATTGAGCCAATGTTATCATCT...
Protein
Download Protein FASTA712 aa · TkA01G590490|TK1151|PROTEIN
MDGVAEGLWELADFHEKNGEIAKSIKCLEAICQSTVSFLPVIEVKTRLRIATMLLKHSQNQLLLKSIPSCFELKCRAFSLLSQCYHLVGAVSSQKQLLNKGLELTADFGEGFSGKLWACNFNSQLANALIIEGDYQGSVSALEQAYACATEMYYPELQMFFATSVLHVHLMQWDDGTLVENAVNRCNDIWESIDTDKRQQCLGLFFYNELLQIFYLLRICDYKAAGQHVDKLDAAMKTDLQKTQHTRELTKELNIINEGL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G590490 |
|---|---|
| TK1151 ID | TkA01G590490 |
| OH-1004 ID | LXL04_000743 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G590490 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr01:148588106-148592123 (+) | ||||||
| Description | Similar to SCC4: Sister chromatid cohesion protein SCC4 | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0007059 chromosome segregation Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0034088 maintenance of mitotic sister chromatid cohesion Biological Process GO:0051301 cell division Biological Process GO:0000785 chromatin Cellular Component GO:0005576 extracellular region Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0032116 SMC loading complex Cellular Component | ||||||
| KEGG gene cross-reference | aag:5575408 ath:AT5G51340 cqu:CpipJ_CPIJ012302 dan:6500620 dwi:6650393 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07719TPR_25-30 aaPF10602RPN75-44 aaPF13424TPR_126-30 aaPF13428TPR_146-33 aaPF13181TPR_86-30 aaPF10345Cohesin_load21-617 aaPF13181TPR_877-107 aaPF13424TPR_12122-151 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G590490 | PF07719 | TPR_2 | 5 | 30 | 4.9e-09 | 36.3 |
| TkA01G590490 | PF10602 | RPN7 | 5 | 44 | 0.021 | 15.3 |
| TkA01G590490 | PF13424 | TPR_12 | 6 | 30 | 3.2e-07 | 31.2 |
| TkA01G590490 | PF13428 | TPR_14 | 6 | 33 | 8.1e-07 | 29.8 |
| TkA01G590490 | PF13181 | TPR_8 | 6 | 30 | 0.0097 | 16.7 |
| TkA01G590490 | PF10345 | Cohesin_load | 21 | 617 | 3.2e-21 | 76.1 |
| TkA01G590490 | PF13181 | TPR_8 | 77 | 107 | 0.0097 | 16.7 |
| TkA01G590490 | PF13424 | TPR_12 | 122 | 151 | 3.2e-07 | 31.2 |
| TkA01G590490 | PF07719 | TPR_2 | 123 | 147 | 4.9e-09 | 36.3 |
| TkA01G590490 | PF17169 | NRBF2_MIT | 123 | 151 | 0.35 | 11.9 |
| TkA01G590490 | PF13428 | TPR_14 | 124 | 147 | 8.1e-07 | 29.8 |
| TkA01G590490 | PF13374 | TPR_10 | 124 | 151 | 0.0074 | 17.0 |
| TkA01G590490 | PF13181 | TPR_8 | 124 | 145 | 0.0097 | 16.7 |
| TkA01G590490 | PF10602 | RPN7 | 133 | 228 | 0.021 | 15.3 |
| TkA01G590490 | PF17169 | NRBF2_MIT | 405 | 413 | 0.35 | 11.9 |
| TkA01G590490 | PF13428 | TPR_14 | 442 | 461 | 8.1e-07 | 29.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q9FGN7 | Arabidopsis thaliana | sp|Q9FGN7|SCC4_ARATH Sister chromatid cohesion protein SCC4 | 56.600% | Swiss-Prot | High |