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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G534850
Reference: TK1151 Chr: Chr01 Coordinates: 134220137-134224483 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1965 bp · TkA01G534850|TK1151|cDNA

ATGGAAGAATCGCCGAGCGCCACCGAAGCCGCCAAAATCTGCTCAATTCAATGTGATCCAATACAAAACCCCACCGGCGGTTGCATAGCCCTCTGCTCTTCCATCTGTGGCTACTTCTGTAACATCAGCGATTCATCTCCGCCGCTACAATCACCAACGCCGTTGCCCACCGACGGTTTTATCCTCAGTACACCAACCCCAAAACACCACCACTCACCACTTAGTCTTCCCCTCAAGATCTCCCTTGTAATCCTTGTTGT...

CDS

Download CDS FASTA

1965 bp · TkA01G534850|TK1151|CDS

ATGGAAGAATCGCCGAGCGCCACCGAAGCCGCCAAAATCTGCTCAATTCAATGTGATCCAATACAAAACCCCACCGGCGGTTGCATAGCCCTCTGCTCTTCCATCTGTGGCTACTTCTGTAACATCAGCGATTCATCTCCGCCGCTACAATCACCAACGCCGTTGCCCACCGACGGTTTTATCCTCAGTACACCAACCCCAAAACACCACCACTCACCACTTAGTCTTCCCCTCAAGATCTCCCTTGTAATCCTTGTTGT...

Protein

Download Protein FASTA

654 aa · TkA01G534850|TK1151|PROTEIN

MEESPSATEAAKICSIQCDPIQNPTGGCIALCSSICGYFCNISDSSPPLQSPTPLPTDGFILSTPTPKHHHSPLSLPLKISLVILVVTFSLFLLYTLYKFYTVWYRSRRRRSPPPSPETQETHDEFLDHDVLDHPIWYIRTIGLQPSVISAITVVKYSKTDGLIEETNCSVCLSEFEEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRAGIVKNTTSSSSDQNLDDSGRTEETRLAIPIPEEVNREERQSELDRQSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G534850
TK1151 IDTkA01G534850
OH-1004 IDLXL04_001443
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G534850
LocationChr01:134220137-134224483 (-)
DescriptionSimilar to 2ODD19: 2-oxoglutarate-dependent dioxygenase 19
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g10500 Converts salicylic acid (SA) to both 2,3-dihydroxybenzoic acid (2,3-DHBA) and 2,5-DHBA in vitro but only 2,3-DHBA in vivo.
DOWNY MILDEW RESISTANT 6 and DMR6-LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis.2015 · DOI: 10.1111/tpj.12719
At4g10490 Converts salicylic acid (SA) to 2,3-dihydroxybenzoic acid (2,3-DHBA) (By similarity).
DOWNY MILDEW RESISTANT 6 and DMR6-LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis.2015 · DOI: 10.1111/tpj.12719

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0480200 Involved in melatonin degradation. No verified direct reference in this release
Os08g0560000 Involved in the regulation of shoot development and salicylic acid (SA) homeostasis. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001443 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002229 defense response to oomycetes Biological Process
GO:0002239 response to oomycetes Biological Process
GO:0009617 response to bacterium Biological Process
GO:0009620 response to fungus Biological Process
GO:0009751 response to salicylic acid Biological Process
GO:0010150 leaf senescence Biological Process
GO:0046244 salicylic acid catabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function
GO:0031418 L-ascorbic acid binding Molecular Function
KEGG gene cross-reference
ath:AT4G10490
ath:AT4G10500
dosa:Os08g0480200
dosa:Os08g0560000
osa:4345848
osa:4346321
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.574
Rank 1 · TkA01G534850 · TK1151
Nucleus0.408
Rank 2 · TkA01G534850 · TK1151
Cell membrane0.130
Rank 3 · TkA01G534850 · TK1151
Endoplasmic reticulum0.064
Rank 4 · TkA01G534850 · TK1151
Lysosome / Vacuole0.048
Rank 5 · TkA01G534850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17120zf-RING_1629-41 aa
PF07010Endomucin42-101 aa
PF13920zf-C3HC4_3166-214 aa
PF11793FANCL_C166-206 aa
PF11789zf-Nse167-210 aa
PF17120zf-RING_16167-210 aa
PF13639zf-RING_2168-211 aa
PF12678zf-rbx1168-211 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G534850PF17120zf-RING_1629419.56.6
TkA01G534850PF07010Endomucin421010.08813.4
TkA01G534850PF13920zf-C3HC4_31662140.001519.0
TkA01G534850PF11793FANCL_C1662060.04814.7
TkA01G534850PF11789zf-Nse1672103.28.4
TkA01G534850PF17120zf-RING_161672109.56.6
TkA01G534850PF13639zf-RING_21682117.4e-1452.4
TkA01G534850PF12678zf-rbx11682111.8e-1041.6
TkA01G534850PF17123zf-RING_111681972e-1040.9
TkA01G534850PF13923zf-C3HC4_21682104.3e-0833.5
TkA01G534850PF14634zf-RING_51682117.8e-0523.3
TkA01G534850PF21202SLX1_C1682020.6711.0
TkA01G534850PF00097zf-C3HC41692101.2e-0732.2
TkA01G534850PF13445zf-RING_UBOX1692088.5e-0523.2
TkA01G534850PF24921RING_XB3-XBAT311692150.3411.7
TkA01G534850PF00628PHD1692031.49.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZSA8Arabidopsis thalianasp|Q9ZSA8|DLO1_ARATH Protein DMR6-LIKE OXYGENASE 139.900%Swiss-ProtMedium
Q9ZSA7Arabidopsis thalianasp|Q9ZSA7|DLO2_ARATH Protein DMR6-LIKE OXYGENASE 238.600%Swiss-ProtMedium
Q6Z244Oryza sativa subsp. japonicasp|Q6Z244|ODD19_ORYSJ 2-oxoglutarate-dependent dioxygenase 1946.900%Swiss-ProtLow
Q6YYX9Oryza sativa subsp. japonicasp|Q6YYX9|SLC1_ORYSJ Probable 2-oxoglutarate-dependent dioxygenase SLC142.100%Swiss-ProtLow

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