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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G360820
Reference: TK1151 Chr: Chr01 Coordinates: 89684208-89686841 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2544 bp · TkA01G360820|TK1151|cDNA

ATGTTTGTCAAGCTTCAGCATTTAGATACCAATTGTATTCCAGTTCTCCATCCACTCAAGACCTCAAAACCGAACATCAATGGCGGAGTTTCACTTCCTCTTCCTTGCCACCGTACTGAAAGAGAATTTGAACAAATCACCAAGAAACACCAAATTCCACCTCAAAAACAATCCGATTTTGACAAAAGAGTTGTTTTTCATACTCCAAAGTCCAACCCAAATGGTTCAGTTGAAACTCCAGGGAGAAAAAAGGGTACAAT...

CDS

Download CDS FASTA

2544 bp · TkA01G360820|TK1151|CDS

ATGTTTGTCAAGCTTCAGCATTTAGATACCAATTGTATTCCAGTTCTCCATCCACTCAAGACCTCAAAACCGAACATCAATGGCGGAGTTTCACTTCCTCTTCCTTGCCACCGTACTGAAAGAGAATTTGAACAAATCACCAAGAAACACCAAATTCCACCTCAAAAACAATCCGATTTTGACAAAAGAGTTGTTTTTCATACTCCAAAGTCCAACCCAAATGGTTCAGTTGAAACTCCAGGGAGAAAAAAGGGTACAAT...

Protein

Download Protein FASTA

847 aa · TkA01G360820|TK1151|PROTEIN

MFVKLQHLDTNCIPVLHPLKTSKPNINGGVSLPLPCHRTEREFEQITKKHQIPPQKQSDFDKRVVFHTPKSNPNGSVETPGRKKGTIEKDRAVKGRIWTNCSTKVVPENGVVKKGHTKCSSKWARYGGCIPAILDTLERVTHLDEAFKPWELSLSNKERTIILKEQKSWQRAMEIFNWFKKKGCYELNVIHYNIMIRILGKAQRWEELEILLEEMQKIKIEPINSTYGTLIDVYSKGGFREKAIHFLDTMNKKEIEPDEV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G360820
TK1151 IDTkA01G360820
OH-1004 IDLXL04_003431
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)92.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G360820
LocationChr01:89684208-89686841 (-)
DescriptionSimilar to At3g23020: Pentatricopeptide repeat-containing protein At3g23020
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g23020 Pentatricopeptide repeat-containing protein At3g23020. No verified direct reference in this release
At1g73710 Pentatricopeptide repeat-containing protein At1g73710. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003431 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0010343 singlet oxygen-mediated programmed cell death Biological Process
GO:1904821 chloroplast disassembly Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G73710
ath:AT3G23020
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.743
Rank 1 · TkA01G360820 · TK1151
Plastid0.164
Rank 2 · TkA01G360820 · TK1151
Nucleus0.066
Rank 3 · TkA01G360820 · TK1151
Cytoplasm0.035
Rank 4 · TkA01G360820 · TK1151
Cell membrane0.011
Rank 5 · TkA01G360820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17874TPR_MalT133-217 aa
PF00637Clathrin162-176 aa
PF13812PPR_3165-201 aa
PF13041PPR_2166-184 aa
PF17177PPR_long166-282 aa
PF06920DHR-2_Lobe_A167-218 aa
PF13762MNE1167-214 aa
PF29070MSC6_N168-247 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G360820PF17874TPR_MalT1332170.0006519.8
TkA01G360820PF00637Clathrin1621767.9e-0936.1
TkA01G360820PF13812PPR_31652011.1e-47160.7
TkA01G360820PF13041PPR_21661846.4e-94308.6
TkA01G360820PF17177PPR_long1662827.2e-33114.5
TkA01G360820PF06920DHR-2_Lobe_A1672180.005317.8
TkA01G360820PF13762MNE11672141.39.8
TkA01G360820PF29070MSC6_N1682473.1e-36126.0
TkA01G360820PF23276TPR_241722268.7e-38129.9
TkA01G360820PF18768RNPP_C1722500.04514.0
TkA01G360820PF12854PPR_11852154.6e-52174.1
TkA01G360820PF13041PPR_21882356.4e-94308.6
TkA01G360820PF00637Clathrin1902527.9e-0936.1
TkA01G360820PF01535PPR1912184.6e-80259.2
TkA01G360820PF26719TPR_Atp25_C1932150.003417.3
TkA01G360820PF20431E_motif1962210.3411.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LS88Arabidopsis thalianasp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g2302044.000%Swiss-ProtMedium
Q9C9U0Arabidopsis thalianasp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g7371044.500%Swiss-ProtMedium

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