TkA01G110930 | RubberDandelionOmics

Gene overview

TkA01G110930

Reference: TK1151 Chr: Chr01 Coordinates: 28195177-28195755 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

543 bp · TkA01G110930|TK1151|cDNA

ATGGCTTCTTCTTTATCGAAATCTAGTACACTTATATTCACTATTCTTCTTGTATCTTTCTTTCTCACGGCCGAATCTCAGCAACTTTCAAGAAGAATATCACAACGATCATTGGGTTTGAGAAAAGAGAAACTGAGCCATTTTCGATTCTACTTCCATGACATAGTCAGTGGCCCCAACGCCACTGCCATCAGGATCGTTGAAGCCACCAGAACCAACCGCACTGCTGCGACTGGTTTTGGTGACATCAGCATGATCGA...

CDS

Download CDS FASTA

543 bp · TkA01G110930|TK1151|CDS

ATGGCTTCTTCTTTATCGAAATCTAGTACACTTATATTCACTATTCTTCTTGTATCTTTCTTTCTCACGGCCGAATCTCAGCAACTTTCAAGAAGAATATCACAACGATCATTGGGTTTGAGAAAAGAGAAACTGAGCCATTTTCGATTCTACTTCCATGACATAGTCAGTGGCCCCAACGCCACTGCCATCAGGATCGTTGAAGCCACCAGAACCAACCGCACTGCTGCGACTGGTTTTGGTGACATCAGCATGATCGA...

Protein

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180 aa · TkA01G110930|TK1151|PROTEIN

MASSLSKSSTLIFTILLVSFFLTAESQQLSRRISQRSLGLRKEKLSHFRFYFHDIVSGPNATAIRIVEATRTNRTAATGFGDISMIDNPLTIGPERTSRLVGRAQGIYTSNYVFVEGKYNGSTLSILGRNAVMSPLREMPVIGGSGLFRFARGYAEARTHTFNMSNGDAVVEFNLYVFHY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G110930`
TK1151 ID	TkA01G110930
OH-1004 ID	LXL04_004792
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G110930

Location Chr01:28195177-28195755 (-)

Description Similar to DIR19: Dirigent protein 19

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g58170`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At1g65870`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At1g55210`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At5g49040`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At3g13650`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004792 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0140859 pterocarpan synthase activity Molecular Function

KEGG gene cross-reference

ath:AT1G55210

ath:AT1G58170

ath:AT1G65870

ath:AT5G49040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.496

Rank 1 · TkA01G110930 · TK1151

Endoplasmic reticulum0.136

Rank 2 · TkA01G110930 · TK1151

Lysosome / Vacuole0.107

Rank 3 · TkA01G110930 · TK1151

Cell membrane0.089

Rank 4 · TkA01G110930 · TK1151

Cytoplasm0.072

Rank 5 · TkA01G110930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03018Dirigent46-178 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G110930	`PF03018`	Dirigent	46	178	1.9e-49	167.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C523`	Arabidopsis thaliana	sp\|Q9C523\|DIR19_ARATH Dirigent protein 19	52.600%	Swiss-Prot	High
`Q9SS03`	Arabidopsis thaliana	sp\|Q9SS03\|DIR21_ARATH Dirigent protein 21	44.900%	Swiss-Prot	Medium
`Q9C891`	Arabidopsis thaliana	sp\|Q9C891\|DIR20_ARATH Dirigent protein 20	49.700%	Swiss-Prot	Medium
`Q9FI66`	Arabidopsis thaliana	sp\|Q9FI66\|DIR3_ARATH Dirigent protein 3	50.900%	Swiss-Prot	High
`Q9LID5`	Arabidopsis thaliana	sp\|Q9LID5\|DIR7_ARATH Dirigent protein 7	47.000%	Swiss-Prot	Medium

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