TkA01G015740 | RubberDandelionOmics

Gene overview

TkA01G015740

Reference: TK1151 Chr: Chr01 Coordinates: 4046202-4046927 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

696 bp · TkA01G015740|TK1151|cDNA

AGGAAGAAAGTTGTCGGAAAAATTAACGCCACGGCGGAGAAGAGGTTGAAGGTTAATACCGGCAAAAGGTTTCGCGGCGTACGGCAACGGCCTTGGGGGAAATGGGCGGCTGAAATCAGAGATCCACTACGACGTGTACGACTATGGCTGGGCACATATAATACTGCTGAAGAAGCTGCCATGGTTTACGACCACGCTGCTATCCAGCTACGTGGACCCGACGCGCTTACTAACTTCACTATCCCACCACAACCTTCAGC...

CDS

Download CDS FASTA

696 bp · TkA01G015740|TK1151|CDS

AGGAAGAAAGTTGTCGGAAAAATTAACGCCACGGCGGAGAAGAGGTTGAAGGTTAATACCGGCAAAAGGTTTCGCGGCGTACGGCAACGGCCTTGGGGGAAATGGGCGGCTGAAATCAGAGATCCACTACGACGTGTACGACTATGGCTGGGCACATATAATACTGCTGAAGAAGCTGCCATGGTTTACGACCACGCTGCTATCCAGCTACGTGGACCCGACGCGCTTACTAACTTCACTATCCCACCACAACCTTCAGC...

Protein

Download Protein FASTA

231 aa · TkA01G015740|TK1151|PROTEIN

RKKVVGKINATAEKRLKVNTGKRFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYNTAEEAAMVYDHAAIQLRGPDALTNFTIPPQPSALQASSDYNSGDDSHNHYANNKATSPKSVLRFASTSTECSTGESTPIHAGNEASDTTKDDASALEKFSGFHAFDAPLSTNDLFDFPDIIPDIFDPPSFSGTPYQDSEQMNMFIDSAMDVGFGAWPADDYFNEFGDIFGSDPLVSL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G015740`
TK1151 ID	TkA01G015740
OH-1004 ID	LXL04_005792
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	95.900
Protein coverage (%)	TK1151 100.000 / OH-1004 69.054 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G015740

Location Chr01:4046202-4046927 (-)

Description Similar to CRF2: Ethylene-responsive transcription factor CRF2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g23750`	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development.	No verified direct reference in this release
`At4g11140`	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development.	No verified direct reference in this release
`At5g53290`	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development.	No verified direct reference in this release
`At4g27950`	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development.	No verified direct reference in this release
`At3g61630`	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005792 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0048364 root development Biological Process

GO:0048366 leaf development Biological Process

GO:0048825 cotyledon development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT1G71130

ath:AT4G11140

ath:AT4G23750

ath:AT4G27950

ath:AT5G53290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.949

Rank 1 · TkA01G015740 · TK1151

Cytoplasm0.124

Rank 2 · TkA01G015740 · TK1151

Cell membrane0.026

Rank 3 · TkA01G015740 · TK1151

Plastid0.020

Rank 4 · TkA01G015740 · TK1151

Endoplasmic reticulum0.019

Rank 5 · TkA01G015740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP223-72 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G015740	`PF00847`	AP2	23	72	2.3e-13	50.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SUQ2`	Arabidopsis thaliana	sp\|Q9SUQ2\|CRF2_ARATH Ethylene-responsive transcription factor CRF2	41.900%	Swiss-Prot	Medium
`O82503`	Arabidopsis thaliana	sp\|O82503\|CRF1_ARATH Ethylene-responsive transcription factor CRF1	41.600%	Swiss-Prot	Medium
`Q9FK12`	Arabidopsis thaliana	sp\|Q9FK12\|CRF3_ARATH Ethylene-responsive transcription factor CRF3	82.500%	Swiss-Prot	Low
`Q9SUE3`	Arabidopsis thaliana	sp\|Q9SUE3\|CRF4_ARATH Ethylene-responsive transcription factor CRF4	77.800%	Swiss-Prot	Low
`Q9M374`	Arabidopsis thaliana	sp\|Q9M374\|CRF6_ARATH Ethylene-responsive transcription factor CRF6	59.000%	Swiss-Prot	Low

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