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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G015560
Reference: TK1151 Chr: Chr01 Coordinates: 3976355-3982958 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4995 bp · TkA01G015560|TK1151|cDNA

TCAGAATTTCAGATTACTACTCTGTCTGGCTCTCACTCTCTCACACACAAACACACACTAAATCCGATTAAAAATTTTCAGCTGGATTTCTGATTCGCTGTTGGAGGGGTGATCCGGCGGAGTTTTAAGCTTCGTTTCATCGGAAATTTGGAGGATCAAGGTCCATTGTGATAAAGAAACAGATTGCCTTGAACACCATCTTTGCTCTTCTGTCAAACACTGAGCTGTTCTTGAAGATTTGAGGAGCATTTTGTGAAAAC...

CDS

Download CDS FASTA

4659 bp · TkA01G015560|TK1151|CDS

ATGAAGAAGAAAAGTTTCAGAAATAAAATTAAGTCGATTGTTGGAAGTCATATTGATCCAGACAAAGATGAGGAACTTAAAGGCAGTAATATAGAAATGGAAGATAATTACAAGAAGATTCTAGAGCTTCTCAAAGAGGAAGACAAGAATGACAAAGACAAACTTCTTGAATTAATTGAAGATTTCCACAAACATCATCAATCTGTTTACACCCGTTATGATCACATCACAGGAGAGCTAAGAGCAAAAGTGCATTCAAA...

Protein

Download Protein FASTA

1552 aa · TkA01G015560|TK1151|PROTEIN

MKKKSFRNKIKSIVGSHIDPDKDEELKGSNIEMEDNYKKILELLKEEDKNDKDKLLELIEDFHKHHQSVYTRYDHITGELRAKVHSKKDNDSSSSSSSSESDLDGTISKKGSKNGKLKVADILKEQLQSANTEIEQLTKKLTLAAKEKQELSSQCQETEKKYEESSNLVAELSQKLEATESEKTSLSVKGSELATELQELVTKCGQLQEKLAEKEKELLNHLDMHTSHKSETEVKMRGFEEELGSLISKKSEMEKQKEEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G015560
TK1151 IDTkA01G015560
OH-1004 IDLXL04_005784
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)92.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G015560
LocationChr01:3976355-3982958 (-)
DescriptionSimilar to CIP1: COP1-interactive protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g41790 Positive regulator of abscisic acid (ABA)-mediated signaling pathways involved in abiotic stress responses (e.g. osmotic stress) and leading to various plant adaptation (e.g. stomata closure).
Arabidopsis COP1-interacting protein 1 is a positive regulator of ABA response.2016 · DOI: 10.1016/j.bbrc.2016.06.147

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005784 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006970 response to osmotic stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0042306 regulation of protein import into nucleus Biological Process
GO:0071215 cellular response to abscisic acid stimulus Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005856 cytoskeleton Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009536 plastid Cellular Component
KEGG gene cross-reference
ath:AT5G41790
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.672
Rank 1 · TkA01G015560 · TK1151
Golgi apparatus0.169
Rank 2 · TkA01G015560 · TK1151
Nucleus0.160
Rank 3 · TkA01G015560 · TK1151
Cell membrane0.100
Rank 4 · TkA01G015560 · TK1151
Endoplasmic reticulum0.065
Rank 5 · TkA01G015560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07765KIP115-74 aa
PF10473CENP-F_leu_zip36-65 aa
PF05859Mis1239-110 aa
PF30917CCDC57_N41-345 aa
PF10473CENP-F_leu_zip118-207 aa
PF07926TPR_MLP1_2121-228 aa
PF05859Mis12124-233 aa
PF07765KIP1125-172 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G015560PF07765KIP115741.7e-0628.8
TkA01G015560PF10473CENP-F_leu_zip36657.2e-0523.6
TkA01G015560PF05859Mis12391100.002618.3
TkA01G015560PF30917CCDC57_N413457.5e-0522.5
TkA01G015560PF10473CENP-F_leu_zip1182077.2e-0523.6
TkA01G015560PF07926TPR_MLP1_21212280.005417.5
TkA01G015560PF05859Mis121242330.002618.3
TkA01G015560PF07765KIP11251721.7e-0628.8
TkA01G015560PF10473CENP-F_leu_zip1722597.2e-0523.6
TkA01G015560PF07765KIP12472641.7e-0628.8
TkA01G015560PF07765KIP12492671.7e-0628.8
TkA01G015560PF05859Mis122503410.002618.3
TkA01G015560PF07926TPR_MLP1_22523250.005417.5
TkA01G015560PF10473CENP-F_leu_zip2583827.2e-0523.6
TkA01G015560PF07765KIP12743081.7e-0628.8
TkA01G015560PF30917CCDC57_N3275097.5e-0522.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JZY1Arabidopsis thalianasp|F4JZY1|CIP1_ARATH COP1-interactive protein 136.800%Swiss-ProtLow

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