TkA01G004100 | RubberDandelionOmics

Gene overview

TkA01G004100

Reference: TK1151 Chr: Chr01 Coordinates: 1074279-1077221 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1638 bp · TkA01G004100|TK1151|cDNA

AAGACACAAGGGTGCATACAAAACACCCCAATAATGTATTGCTTACGTGTACGATCTATCAAAGTTGCAAATGTATGTCCAAATACGGATATTACCGGAAGAAAACTCGGAAATAGCACCAATTTTCCCCCTTTTTTGTTTCCTTCTATTCCATCCTAAAATGACCCCATCGATCACTGTCAGTCTGTCACTTTCCAGTCAATTTTAACATCCTTTTCAGATTGGTTCAAGTTGAACGACTGCTGAACCACCGATTTCTT...

CDS

Download CDS FASTA

651 bp · TkA01G004100|TK1151|CDS

ATGGTGGAGTCAATGAGATTGTTTTTCTGTGTGTATCGTGACCTCCTTGCCATTTCTATCCTTGCTCCCATCGCCTATTTTCGCGAAAAGAGAACAAGACCAGCCATGACTAGGCAGTTTCTCATGTATTTCTTCTTTCTTGGGTTGACTGGAATATTTGGGAACCAGCTTTTGTTTCTTATTGGTCTAGGCTACACAAATCCTACATATGCTGCAGCAATTCAACCTTCAATTCCTGTCTTCACATTCATACTCGCTGT...

Protein

Download Protein FASTA

216 aa · TkA01G004100|TK1151|PROTEIN

MVESMRLFFCVYRDLLAISILAPIAYFREKRTRPAMTRQFLMYFFFLGLTGIFGNQLLFLIGLGYTNPTYAAAIQPSIPVFTFILAVLMGAETINVLKTEGQAKVGGTIVCVSGAILMVIFKGPALLGYAANVPDIIPGGQPELSGWMISGLDNWHIGVLCLLANCICMAAFLSVQAPVLAMYSANLSVTAYSYFFGTFFMVVTAVTLNNESTNWS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G004100`
TK1151 ID	TkA01G004100
OH-1004 ID	LXL04_005967
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.000
Protein coverage (%)	TK1151 96.296 / OH-1004 55.615 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G004100

Location Chr01:1074279-1077221 (-)

Description Similar to At5g45370: WAT1-related protein At5g45370

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g45870`	WAT1-related protein At3g45870.	No verified direct reference in this release
`At5g45370`	WAT1-related protein At5g45370.	No verified direct reference in this release
`At4g19185`	WAT1-related protein At4g19185.	No verified direct reference in this release
`At1g75500`	Required for secondary wall formation in fibers, especially in short days conditions.	Walls are thin 1 (WAT1), an Arabidopsis homolog of Medicago truncatula NODULIN21, is a tonoplast-localized protein required for secondary wall formation in fibers.2010 · DOI: 10.1111/j.1365-313x.2010.04256.x Light-regulated compensation of wat1 (walls are thin1) growth and secondary cell wall phenotypes is auxin-independent.2010 · DOI: 10.4161/psb.5.10.13103 Arabidopsis wat1 (walls are thin1)-mediated resistance to the bacterial vascular pathogen, Ralstonia solanacearum, is accompanied by cross-regulation of salicylic acid and tryptophan metabolism.2013 · DOI: 10.1111/tpj.12027
`At3g53210`	WAT1-related protein At3g53210.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005967 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000162 L-tryptophan biosynthetic process Biological Process

GO:0006952 defense response Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0009851 auxin biosynthetic process Biological Process

GO:0010315 auxin export across the plasma membrane Biological Process

GO:0071555 cell wall organization Biological Process

GO:0090355 positive regulation of auxin metabolic process Biological Process

GO:0090358 positive regulation of L-tryptophan metabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

KEGG gene cross-reference

ath:AT1G75500

ath:AT3G45870

ath:AT4G19185

ath:AT5G45370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.360

Rank 1 · TkA01G004100 · TK1151

Cell membrane0.221

Rank 2 · TkA01G004100 · TK1151

Endoplasmic reticulum0.203

Rank 3 · TkA01G004100 · TK1151

Golgi apparatus0.114

Rank 4 · TkA01G004100 · TK1151

Cytoplasm0.084

Rank 5 · TkA01G004100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00892EamA7-118 aa

PF20342DUF663717-33 aa

PF09843DUF207017-118 aa

PF05977MFS_340-118 aa

PF20342DUF663757-120 aa

PF00892EamA157-206 aa

PF09843DUF2070166-207 aa

PF20342DUF6637187-187 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G004100	`PF00892`	EamA	7	118	1.7e-12	48.5
TkA01G004100	`PF20342`	DUF6637	17	33	0.058	14.1
TkA01G004100	`PF09843`	DUF2070	17	118	8.1	5.3
TkA01G004100	`PF05977`	MFS_3	40	118	0.008	15.4
TkA01G004100	`PF20342`	DUF6637	57	120	0.058	14.1
TkA01G004100	`PF00892`	EamA	157	206	1.7e-12	48.5
TkA01G004100	`PF09843`	DUF2070	166	207	8.1	5.3
TkA01G004100	`PF20342`	DUF6637	187	187	0.058	14.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5PP32`	Arabidopsis thaliana	sp\|Q5PP32\|WTR25_ARATH WAT1-related protein At3g45870	66.500%	Swiss-Prot	High
`F4KD68`	Arabidopsis thaliana	sp\|F4KD68\|WTR43_ARATH WAT1-related protein At5g45370	65.000%	Swiss-Prot	High
`Q8W4R9`	Arabidopsis thaliana	sp\|Q8W4R9\|WTR35_ARATH WAT1-related protein At4g19185	62.300%	Swiss-Prot	High
`Q94AP3`	Arabidopsis thaliana	sp\|Q94AP3\|WAT1_ARATH Protein WALLS ARE THIN 1	37.900%	Swiss-Prot	Medium
`F4J9A3`	Arabidopsis thaliana	sp\|F4J9A3\|WTR26_ARATH WAT1-related protein At3g53210	39.900%	Swiss-Prot	Medium

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