TkA01G001970 | RubberDandelionOmics

Gene overview

TkA01G001970

Reference: TK1151 Chr: Chr01 Coordinates: 526451-529099 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2058 bp · TkA01G001970|TK1151|cDNA

TTGAGTTGGGCCGAATAAGCTATTATTTGACTTTTGCTGCATTGAACGCAGGCATCTTGACTTCCAAAAGAACGACCGGACATTCACTCTCTCATCGTCTTCATCCATCAAATCTTCTCACATCCACACGATTCTCTTCCAAATCCACATCCCAAATGTTTTCTCGTACTCCGCTTCACTCTCTTGATCTATCATCAATTTATCCATGGCTACCGCCTGCGCCTCCTCTGTTTCATGGAACTATCTCCCCAAGAACTACC...

CDS

Download CDS FASTA

1092 bp · TkA01G001970|TK1151|CDS

ATGGCTTCCTCTGTTTTACGTCCCATCTTTGGTAGTTTTACCTCTTGCTGTTCAAGACATCCCCGCAGCTTCAGGGCTCAAATCTGCTTCATTTTAGTTACAGGGTGGCTGGCGTCACTTGCTGTTGCAGGATACACAGCTATAGCCGTTAGAAAAATGGTGAAAACAGAAATGATTGCAGCTGAACCCATGGCAAAACCTTCAGCTTTTTCCACACTGGAAGTGGTTGCCTGGAGTGTGATTTCTGTTGCATCGTTTGT...

Protein

Download Protein FASTA

363 aa · TkA01G001970|TK1151|PROTEIN

MASSVLRPIFGSFTSCCSRHPRSFRAQICFILVTGWLASLAVAGYTAIAVRKMVKTEMIAAEPMAKPSAFSTLEVVAWSVISVASFVAALKYPELLGTNARTCLPFLLGSTVIGYIVGTGLPSGMKKIFHPIICCALAADLAAFAFGYFSKSGLYPILGYYLTKVSSNPGAGDILMGFLGSVILSFAFSMFKQRKLVKRHAAEIFTSITIATLFSLYSTAVIGRLVGLEPTLTISILPRCITVALALSIVSLFEGANSSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G001970`
TK1151 ID	TkA01G001970
OH-1004 ID	LXL04_005993
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.000
Protein coverage (%)	TK1151 84.022 / OH-1004 56.781 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G001970

Location Chr01:526451-529099 (-)

Description Similar to PLGG1: Plastidal glycolate/glycerate translocator 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32080`	Glycolate/glycerate transporter required for photorespiration.	A chloroplast envelope membrane protein containing a putative LrgB domain related to the control of bacterial death and lysis is required for chloroplast development in Arabidopsis thaliana.2012 · DOI: 10.1111/j.1469-8137.2011.03867.x Loss of the plastid envelope protein AtLrgB causes spontaneous chlorotic cell death in Arabidopsis thaliana.2012 · DOI: 10.1093/pcp/pcr180

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005993 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009658 chloroplast organization Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009853 photorespiration Biological Process

GO:0010118 stomatal movement Biological Process

GO:0012501 programmed cell death Biological Process

GO:0019835 cytolysis Biological Process

GO:0031640 killing of cells of another organism Biological Process

GO:0042631 cellular response to water deprivation Biological Process

GO:0048527 lateral root development Biological Process

GO:0097339 glycolate transmembrane transport Biological Process

GO:1901975 glycerate transmembrane transport Biological Process

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G32080

bsu:BSU38330

sep:SE_2014

ser:SERP2027

ssp:SSP0461

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.592

Rank 1 · TkA01G001970 · TK1151

Lysosome / Vacuole0.083

Rank 2 · TkA01G001970 · TK1151

Cytoplasm0.083

Rank 3 · TkA01G001970 · TK1151

Cell membrane0.067

Rank 4 · TkA01G001970 · TK1151

Golgi apparatus0.066

Rank 5 · TkA01G001970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03788LrgA26-46 aa

PF04172LrgB34-52 aa

PF03788LrgA83-117 aa

PF04172LrgB111-332 aa

PF03788LrgA163-222 aa

PF10717ODV-E18166-179 aa

PF10717ODV-E18219-271 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G001970	`PF03788`	LrgA	26	46	0.94	10.2
TkA01G001970	`PF04172`	LrgB	34	52	1.1e-37	130.3
TkA01G001970	`PF03788`	LrgA	83	117	0.94	10.2
TkA01G001970	`PF04172`	LrgB	111	332	1.1e-37	130.3
TkA01G001970	`PF03788`	LrgA	163	222	0.94	10.2
TkA01G001970	`PF10717`	ODV-E18	166	179	3.3	8.4
TkA01G001970	`PF10717`	ODV-E18	219	271	3.3	8.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FVQ4`	Arabidopsis thaliana	sp\|Q9FVQ4\|PLGG1_ARATH Plastidal glycolate/glycerate translocator 1, chloroplastic	81.000%	Swiss-Prot	High

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