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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G000550
Reference: TK1151 Chr: Chr01 Coordinates: 127187-132790 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3486 bp · TkA01G000550|TK1151|cDNA

TTAAAACTCAAGGGGGATTTCTGGAAGACGGAGTAATTCACAAAACCCTGCCTGCCCCTTTTATCTTCTTCTCCGCCCTCTCGACACTATCTCCTCCCTATCCGTTTACCACTATCTTCACTGAGTTCCTACCGTCGCCTCAACTCGCCGGAGCTTCACCGCAGAGGGGCAGGGTAGTCAGAAATTCACACCATGAACCCTTCGATTCTTCTGACACAACAGCCATCCTCTCCTCACCCAACCATCTTGTTCACTCCATT...

CDS

Download CDS FASTA

3072 bp · TkA01G000550|TK1151|CDS

ATGAACCCTTCGATTCTTCTGACACAACAGCCATCCTCTCCTCACCCAACCATCTTGTTCACTCCATTTCTCAACCCTACACCTCTCAAAGTCACAACCAAATTTCTCACCTTCAATCACCGTCGGCACAGATACAGCTGCCGTGCGCCTTCCGTCCGTTGCTCGGTATCTTCATCCTCAGTAGACCAACCAACCACCACCGCTCCGGTAAACGATGTGTTTGGAGGGAAGAAGGAGCTGTCGGCATTCCAATCACTTGT...

Protein

Download Protein FASTA

1023 aa · TkA01G000550|TK1151|PROTEIN

MNPSILLTQQPSSPHPTILFTPFLNPTPLKVTTKFLTFNHRRHRYSCRAPSVRCSVSSSSVDQPTTTAPVNDVFGGKKELSAFQSLVDSMSPAVRLASSVVVVAGAVAAGYGLGLRIGGTRNASLGGAVVLGAAGAGAVYALNSSVPEIAALSLHNYVAGSDPGALKKEDIESIASRYGVSKQNEAFSAELCDIYCRYVTSVLPSGGEDLKGNEADIIMKFKSSLGIDDPDAAAMHMEIGRRIFRQRLETGDREADAEQR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G000550
TK1151 IDTkA01G000550
OH-1004 IDLXL04_036629
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)97.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G000550
LocationChr01:127187-132790 (+)
DescriptionSimilar to TIC110: Protein TIC110, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g06950 Involved in protein precursor import into chloroplasts.
atTic110 functions as a scaffold for coordinating the stromal events of protein import into chloroplasts.2003 · DOI: 10.1074/jbc.m306367200
In vivo studies on the roles of Tic110, Tic40 and Hsp93 during chloroplast protein import.2005 · DOI: 10.1111/j.1365-313x.2004.02307.x
Arabidopsis tic110 is essential for the assembly and function of the protein import machinery of plastids.2005 · DOI: 10.1105/tpc.105.030700

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036629 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009658 chloroplast organization Biological Process
GO:0045037 protein import into chloroplast stroma Biological Process
GO:0005576 extracellular region Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0009706 chloroplast inner membrane Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0031897 Tic complex Cellular Component
GO:0061927 TOC-TIC supercomplex I Cellular Component
KEGG gene cross-reference
ath:AT1G06950
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.957
Rank 1 · TkA01G000550 · TK1151
Mitochondrion0.042
Rank 2 · TkA01G000550 · TK1151
Nucleus0.031
Rank 3 · TkA01G000550 · TK1151
Cytoplasm0.029
Rank 4 · TkA01G000550 · TK1151
Peroxisome0.022
Rank 5 · TkA01G000550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16940Tic11080-652 aa
PF05099TerB209-234 aa
PF22915ARMH5218-246 aa
PF22915ARMH5282-313 aa
PF22915ARMH5321-379 aa
PF22915ARMH5428-479 aa
PF12836HHH_3433-468 aa
PF22915ARMH5518-570 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G000550PF16940Tic110806521e-282939.6
TkA01G000550PF05099TerB2092341.79.7
TkA01G000550PF22915ARMH52182460.0004721.3
TkA01G000550PF22915ARMH52823130.0004721.3
TkA01G000550PF22915ARMH53213790.0004721.3
TkA01G000550PF22915ARMH54284790.0004721.3
TkA01G000550PF12836HHH_34334680.01516.1
TkA01G000550PF22915ARMH55185700.0004721.3
TkA01G000550PF05099TerB5315561.79.7
TkA01G000550PF05099TerB6646891.79.7
TkA01G000550PF20404DUF66947167810.1213.5
TkA01G000550PF05099TerB7547741.79.7
TkA01G000550PF16940Tic1107608921e-282939.6
TkA01G000550PF22915ARMH57628040.0004721.3
TkA01G000550PF05099TerB7918321.79.7
TkA01G000550PF22915ARMH57948310.0004721.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LPR9Arabidopsis thalianasp|Q8LPR9|TI110_ARATH Protein TIC110, chloroplastic63.500%Swiss-ProtHigh

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