LXL04_038622 | RubberDandelionOmics

Gene overview

LXL04_038622

Reference: OH-1004 Chr: Chr09 Coordinates: 45867702-45869487 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1467 bp · LXL04_038622|LXL04_038622|OH1004|cDNA

ATGATGTCTATCGACAAACAGTTTCAACATCTCAAAATAAATCTAGAAGCTATAATATTAGCAACCAACAACTTTTCTGAAGATTATTGCATAGGTGCTGGAGGTTTTGGAAAGGTTTACAAAGGAGATCTACTACTTTCAGCGCGGATTACCACAGTTGCTTTAAAACGATTAGATCATCGTACGTTCGGGCAAGGAGATTCTGAGTTTTGGAAGGAGGTCATTATGCTCTCCCTCTACAGTCATGCAAATATCATATC...

CDS

Download CDS FASTA

1467 bp · LXL04_038622|LXL04_038622|OH1004|CDS

ATGATGTCTATCGACAAACAGTTTCAACATCTCAAAATAAATCTAGAAGCTATAATATTAGCAACCAACAACTTTTCTGAAGATTATTGCATAGGTGCTGGAGGTTTTGGAAAGGTTTACAAAGGAGATCTACTACTTTCAGCGCGGATTACCACAGTTGCTTTAAAACGATTAGATCATCGTACGTTCGGGCAAGGAGATTCTGAGTTTTGGAAGGAGGTCATTATGCTCTCCCTCTACAGTCATGCAAATATCATATC...

Protein

Download Protein FASTA

488 aa · LXL04_038622|LXL04_038622|OH1004|PROTEIN

MMSIDKQFQHLKINLEAIILATNNFSEDYCIGAGGFGKVYKGDLLLSARITTVALKRLDHRTFGQGDSEFWKEVIMLSLYSHANIISLLGFCDEKGEKILVYEYLSRKGLHLYLDSNQLTWVQRLKICIGAAHGLAYLHDPDGKQQRVLHRDIKSSNILLAENWDAKIAVLVFPNLVLLTNNIHLLCRIILQARSDTSGLLTKESDVYSFGVTLFEVLCGRLCFAIDNKRQSFTELVRESCKENNLDGIICDTIKDEIDP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038622`
TK1151 ID	TkA01G022750
OH-1004 ID	LXL04_038622
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	79.800
Protein coverage (%)	TK1151 100.000 / OH-1004 99.385 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038622

Location Chr09:45867702-45869487 (+)

Description Similar to HERK1: Receptor-like protein kinase HERK 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At1g30570`	Probable receptor-like protein kinase At1g30570.	No verified direct reference in this release
`At5g54380`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	A receptor-like kinase mediates the response of Arabidopsis cells to the inhibition of cellulose synthesis.2007 · DOI: 10.1016/j.cub.2007.05.018 Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038622 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016324 apical plasma membrane Cellular Component

GO:0043680 filiform apparatus Cellular Component

GO:0090404 pollen tube tip Cellular Component

KEGG gene cross-reference

ath:AT1G30570

ath:AT3G46290

ath:AT5G28680

ath:AT5G54380

ath:AT5G59700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.439

Rank 1 · LXL04_038622 · OH-1004

Nucleus0.295

Rank 2 · LXL04_038622 · OH-1004

Cell membrane0.241

Rank 3 · LXL04_038622 · OH-1004

Endoplasmic reticulum0.088

Rank 4 · LXL04_038622 · OH-1004

Golgi apparatus0.063

Rank 5 · LXL04_038622 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase29-169 aa

PF07714.24PK_Tyr_Ser-Thr30-290 aa

PF00069.32Pkinase202-289 aa

PF00462.31Glutaredoxin369-419 aa

PF23733.3GRXCR1-2_C443-488 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038622	`PF00069.32`	Pkinase	29	169	5.8e-30	105.3
LXL04_038622	`PF07714.24`	PK_Tyr_Ser-Thr	30	290	2.3e-32	113.0
LXL04_038622	`PF00069.32`	Pkinase	202	289	5.8e-30	105.3
LXL04_038622	`PF00462.31`	Glutaredoxin	369	419	8.7e-06	26.6
LXL04_038622	`PF23733.3`	GRXCR1-2_C	443	488	5.2e-16	59.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LX66`	Arabidopsis thaliana	Receptor-like protein kinase HERK 1	40.594%	Swiss-Prot	moderate database homology
`Q9FN92`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g59700	40.741%	Swiss-Prot	moderate database homology
`Q9SA72`	Arabidopsis thaliana	Probable receptor-like protein kinase At1g30570	38.206%	Swiss-Prot	moderate database homology
`Q9LK35`	Arabidopsis thaliana	Receptor-like protein kinase THESEUS 1	39.796%	Swiss-Prot	moderate database homology
`Q3E8W4`	Arabidopsis thaliana	Receptor-like protein kinase ANXUR2	38.721%	Swiss-Prot	moderate database homology

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