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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_037425
Reference: OH-1004 Chr: Chr09 Coordinates: 10705511-10716783 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3909 bp · LXL04_037425|LXL04_037425|OH1004|cDNA

ATGGGGCTATGCAGTAGCAAAAGCAAGAGTGGAGGGACATACCCAGATGCTCACAGACCAAGATCCGTCGAACCCAAAATAGTTTACAGCAAATCGCCAGCTCCGGCAGCCCAAATTCCGGCGAGAAAGCAACACCAGCCGCCGCCGCCCAGCCCCAAAAGGATATTCAAAGCCGACCCAAACTCAATTATCGGCAAACCATTTGAAGATGTTAAACAACACTACACAATGGGGAAAGAATTGGGTAGAGGTCAATTTGG...

CDS

Download CDS FASTA

3909 bp · LXL04_037425|LXL04_037425|OH1004|CDS

ATGGGGCTATGCAGTAGCAAAAGCAAGAGTGGAGGGACATACCCAGATGCTCACAGACCAAGATCCGTCGAACCCAAAATAGTTTACAGCAAATCGCCAGCTCCGGCAGCCCAAATTCCGGCGAGAAAGCAACACCAGCCGCCGCCGCCCAGCCCCAAAAGGATATTCAAAGCCGACCCAAACTCAATTATCGGCAAACCATTTGAAGATGTTAAACAACACTACACAATGGGGAAAGAATTGGGTAGAGGTCAATTTGG...

Protein

Download Protein FASTA

1302 aa · LXL04_037425|LXL04_037425|OH1004|PROTEIN

MGLCSSKSKSGGTYPDAHRPRSVEPKIVYSKSPAPAAQIPARKQHQPPPPSPKRIFKADPNSIIGKPFEDVKQHYTMGKELGRGQFGVTYLCIEKSTGHKYACKSISKKKLVTKSDKDDMRKEIQIMQHLSGQANIVEFKGAYEDKQSVHLVMEVCEGGELFDRIIAEGHYSERAAASICRSIVNVVHVCHFMGVMHRDLKPENFLLSDKSEKALLKATDFGLSVFIQEGKAYRQVVGSAYYVAPEVLTRKYGKEIDIWS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_037425
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_037425
LocationChr09:10705511-10716783 (-)
DescriptionSimilar to CPK9: Calcium-dependent protein kinase 9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g20410 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
At1g50700 Ca(2+)-dependent protein kinase.
THI1, a Thiamine Thiazole Synthase, Interacts with Ca2+-Dependent Protein Kinase CPK33 and Modulates the S-Type Anion Channels and Stomatal Closure in Arabidopsis.2016 · DOI: 10.1104/pp.15.01649
At4g04720 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0515100 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037425 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0004683 calcium/calmodulin-dependent protein kinase activity Molecular Function
GO:0005509 calcium ion binding Molecular Function
GO:0005516 calmodulin binding Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0009931 calcium-dependent protein serine/threonine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G50700
ath:AT3G20410
dosa:Os07g0515100
osa:4343373
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.647
Rank 1 · LXL04_037425 · OH-1004
Nucleus0.233
Rank 2 · LXL04_037425 · OH-1004
Cell membrane0.227
Rank 3 · LXL04_037425 · OH-1004
Golgi apparatus0.073
Rank 4 · LXL04_037425 · OH-1004
Lysosome / Vacuole0.068
Rank 5 · LXL04_037425 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase75-333 aa
PF07714.24PK_Tyr_Ser-Thr76-329 aa
PF13499.13EF-hand_7380-441 aa
PF00036.39EF-hand_1381-407 aa
PF13405.13EF-hand_6381-409 aa
PF13202.13EF-hand_5381-403 aa
PF13833.13EF-hand_8393-440 aa
PF13499.13EF-hand_7450-513 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_037425PF00069.32Pkinase753332.2e-196650.8
LXL04_037425PF07714.24PK_Tyr_Ser-Thr763292.1e-99332.7
LXL04_037425PF13499.13EF-hand_73804414.2e-64213.5
LXL04_037425PF00036.39EF-hand_13814073.5e-61199.0
LXL04_037425PF13405.13EF-hand_63814093.1e-47154.5
LXL04_037425PF13202.13EF-hand_53814032.5e-39131.7
LXL04_037425PF13833.13EF-hand_83934402.4e-2898.3
LXL04_037425PF13499.13EF-hand_74505134.2e-64213.5
LXL04_037425PF00036.39EF-hand_14534783.5e-61199.0
LXL04_037425PF13405.13EF-hand_64534813.1e-47154.5
LXL04_037425PF13202.13EF-hand_54554752.5e-39131.7
LXL04_037425PF13833.13EF-hand_84665132.4e-2898.3
LXL04_037425PF00036.39EF-hand_14885143.5e-61199.0
LXL04_037425PF07714.24PK_Tyr_Ser-Thr5478202.1e-99332.7
LXL04_037425PF00069.32Pkinase5488182.2e-196650.8
LXL04_037425PF00069.32Pkinase85811162.2e-196650.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q38868Arabidopsis thalianaCalcium-dependent protein kinase 973.929%Swiss-Protweak database homology
Q9C6P3Arabidopsis thalianaCalcium-dependent protein kinase 3374.231%Swiss-Protweak database homology
Q9ZSA2Arabidopsis thalianaCalcium-dependent protein kinase 2173.725%Swiss-Protweak database homology
P53683Oryza sativa subsp. japonicaCalcium-dependent protein kinase 1972.171%Swiss-Protweak database homology

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