LXL04_034894 | RubberDandelionOmics

Gene overview

LXL04_034894

Reference: OH-1004 Chr: Chr08 Coordinates: 6349583-6350533 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

678 bp · LXL04_034894|LXL04_034894|OH1004|cDNA

ATGAGAATAGCTCTTCCATCATTTCTGCTAAACATAGACTTTGCATCTGGTGGGATTGTATTACTATGGATTGTTGGGGTTTGCTTATCTTTCAAGATCTTCAAAGTATGCTGGAACTCAAGAATATCAAACAAGAAGATGCAAAGTTTTGGAAGCAACATCCCGCATTAGTAAAGGCTCATTTGACCCCAGAATTACAGCATGACTTTAAACGCGTAGTGGAGCTTGCACCTCGCCTTCTTCAAGAGTTAATGAAGGCA...

CDS

Download CDS FASTA

414 bp · LXL04_034894|LXL04_034894|OH1004|CDS

ATGGATTGTTGGGGTTTGCTTATCTTTCAAGATCTTCAAAGTATGCTGGAACTCAAGAATATCAAACAAGAAGATGCAAAGTTTTGGAAGCAACATCCCGCATTAGTAAAGGCTCATTTGACCCCAGAATTACAGCATGACTTTAAACGCGTAGTGGAGCTTGCACCTCGCCTTCTTCAAGAGTTAATGAAGGCAACGGTTCTTGACCCTGCAGATTACACGGGACTCGAAGCTGCATTAGACAACCACAAAGTTAGTCT...

Protein

Download Protein FASTA

137 aa · LXL04_034894|LXL04_034894|OH1004|PROTEIN

MDCWGLLIFQDLQSMLELKNIKQEDAKFWKQHPALVKAHLTPELQHDFKRVVELAPRLLQELMKATVLDPADYTGLEAALDNHKVSLYFTESPTNPFLRCVDIELVSKMCHEKGAIVCIDGTFATPLNQKALALGWC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034894`
TK1151 ID	TkA04G273720
OH-1004 ID	LXL04_034894
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034894

Location Chr08:6349583-6350533 (-)

Description Similar to CGS1: Cystathionine gamma-synthase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g01120`	Catalyzes the first committed step of methionine (Met) biosynthesis.	No verified direct reference in this release
`At1g33320`	Catalyzes the first committed step of methionine (Met) biosynthesis.	No verified direct reference in this release
`At1g79940`	Required for integral membrane and secreted preprotein translocation across the endoplasmic reticulum membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0307200`	May be required for integral membrane and secreted preprotein translocation across the endoplasmic reticulum membrane.	Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.2013 · DOI: 10.1093/jxb/ert312

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034894 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001887 selenium compound metabolic process Biological Process

GO:0006614 SRP-dependent cotranslational protein targeting to membrane Biological Process

GO:0006620 post-translational protein targeting to endoplasmic reticulum membrane Biological Process

GO:0009086 methionine biosynthetic process Biological Process

GO:0015031 protein transport Biological Process

GO:0019346 transsulfuration Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G33320

ath:AT1G79940

ath:AT3G01120

dosa:Os04g0307200

nta:107822634

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.410

Rank 1 · LXL04_034894 · OH-1004

Peroxisome0.217

Rank 2 · LXL04_034894 · OH-1004

Mitochondrion0.147

Rank 3 · LXL04_034894 · OH-1004

Nucleus0.142

Rank 4 · LXL04_034894 · OH-1004

Extracellular0.105

Rank 5 · LXL04_034894 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01053.27Cys_Met_Meta_PP63-135 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034894	`PF01053.27`	Cys_Met_Meta_PP	63	135	1.1e-17	64.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P55217`	Arabidopsis thaliana	Cystathionine gamma-synthase 1, chloroplastic	78.082%	Swiss-Prot	moderate database homology
`Q9C876`	Arabidopsis thaliana	Probable cystathionine gamma-synthase 2	64.384%	Swiss-Prot	moderate database homology
`Q0WT48`	Arabidopsis thaliana	DnaJ protein ERDJ2A	56.061%	Swiss-Prot	weak database homology
`Q7XVN7`	Oryza sativa subsp. japonica	DnaJ protein ERDJ2	53.030%	Swiss-Prot	weak database homology

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