LXL04_033553 | RubberDandelionOmics

Gene overview

LXL04_033553

Reference: OH-1004 Chr: Chr07 Coordinates: 47575558-47577890 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1299 bp · LXL04_033553|LXL04_033553|OH1004|cDNA

ATGTTAACATTCCTGTTTTCCTTATTTATTGCCAGAGCAGACATGACACCTGTACCACCAGATCAGTCATGTCAATCTTTTACTCTTGCCGACATCCGATCAGCAACCAACAAATTCGACGATAACTTACGCATTGGTCATGGAGGATTTGCTGATGTGTATAAATGTTGTAGGAAGATCGGTTCAGTAATAAGCAGCAAACGTGTGATGCCATTGGATGGTGCACTTGGATGCGAATCTGCTCCTGATAGTGCGATGGT...

CDS

Download CDS FASTA

1299 bp · LXL04_033553|LXL04_033553|OH1004|CDS

ATGTTAACATTCCTGTTTTCCTTATTTATTGCCAGAGCAGACATGACACCTGTACCACCAGATCAGTCATGTCAATCTTTTACTCTTGCCGACATCCGATCAGCAACCAACAAATTCGACGATAACTTACGCATTGGTCATGGAGGATTTGCTGATGTGTATAAATGTTGTAGGAAGATCGGTTCAGTAATAAGCAGCAAACGTGTGATGCCATTGGATGGTGCACTTGGATGCGAATCTGCTCCTGATAGTGCGATGGT...

Protein

Download Protein FASTA

432 aa · LXL04_033553|LXL04_033553|OH1004|PROTEIN

MLTFLFSLFIARADMTPVPPDQSCQSFTLADIRSATNKFDDNLRIGHGGFADVYKCCRKIGSVISSKRVMPLDGALGCESAPDSAMVAERVVKSEVMNLSSVSHIPKQKKKKSKVVMPNSMVKITPAMLPDDVVEKKVVNLSRRTYKCRFADICQEGEDFNAKFDHEIGYVEEDKTSNLSPQMPNSMQLHLRNAKKQTGIFCNLVVQPNLKLEELNHPNLIRLLGYCLNDRDLFCVYELIPDTSLDKYLHQGGPDTTSVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033553`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033553

Location Chr07:47575558-47577890 (-)

Description Similar to PIX13: Probable serine/threonine-protein kinase PIX13

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g17220`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g14370`	Involved in disease resistance signaling.	Receptor-like cytoplasmic kinases integrate signaling from multiple plant immune receptors and are targeted by a Pseudomonas syringae effector.2010 · DOI: 10.1016/j.chom.2010.03.007 xopAC-triggered immunity against Xanthomonas depends on Arabidopsis receptor-like cytoplasmic kinase genes PBL2 and RIPK.2013 · DOI: 10.1371/journal.pone.0073469 The Decoy Substrate of a Pathogen Effector and a Pseudokinase Specify Pathogen-Induced Modified-Self Recognition and Immunity in Plants.2015 · DOI: 10.1016/j.chom.2015.08.004 Ligand-triggered allosteric ADP release primes a plant NLR complex.2019 · DOI: 10.1126/science.aav5868
`At2g02800`	May be involved in plant defense signaling.	No verified direct reference in this release
`At5g02290`	May play a role in the regulation of plant growth and development (Probable).	No verified direct reference in this release
`At5g15080`	Involved in chitin-triggered immune signaling and is required for reactive oxygen species (ROS) production.	Tyrosine phosphorylation of the lectin receptor-like kinase LORE regulates plant immunity.2020 · DOI: 10.15252/embj.2019102856 Receptor-like cytoplasmic kinases PBL34/35/36 are required for CLE peptide-mediated signaling to maintain shoot apical meristem and root apical meristem homeostasis in Arabidopsis.2022 · DOI: 10.1093/plcell/koab315

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033553 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002221 pattern recognition receptor signaling pathway Biological Process

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0010073 meristem maintenance Biological Process

GO:0010078 maintenance of root meristem identity Biological Process

GO:0010088 phloem development Biological Process

GO:0010492 maintenance of shoot apical meristem identity Biological Process

GO:0031663 lipopolysaccharide-mediated signaling pathway Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0062207 regulation of pattern recognition receptor signaling pathway Biological Process

GO:1900426 positive regulation of defense response to bacterium Biological Process

KEGG gene cross-reference

ath:AT1G14370

ath:AT2G02800

ath:AT2G17220

ath:AT5G02290

ath:AT5G15080

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.474

Rank 1 · LXL04_033553 · OH-1004

Cytoplasm0.303

Rank 2 · LXL04_033553 · OH-1004

Nucleus0.293

Rank 3 · LXL04_033553 · OH-1004

Endoplasmic reticulum0.065

Rank 4 · LXL04_033553 · OH-1004

Golgi apparatus0.042

Rank 5 · LXL04_033553 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr212-428 aa

PF00069.32Pkinase212-426 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033553	`PF07714.24`	PK_Tyr_Ser-Thr	212	428	4.1e-17	63.1
LXL04_033553	`PF00069.32`	Pkinase	212	426	2.1e-13	51.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SII6`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PIX13	40.086%	Swiss-Prot	moderate database homology
`O49839`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL2	36.596%	Swiss-Prot	moderate database homology
`O49840`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL3	36.596%	Swiss-Prot	moderate database homology
`P43293`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL11	36.087%	Swiss-Prot	moderate database homology
`Q9LFP7`	Arabidopsis thaliana	Serine/threonine-protein kinase PBL34	33.813%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card