LXL04_032929 | RubberDandelionOmics

Gene overview

LXL04_032929

Reference: OH-1004 Chr: Chr07 Coordinates: 31835394-31835726 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

333 bp · LXL04_032929|LXL04_032929|OH1004|cDNA

ATGAAATGTAGTAAACCCAATTTCAAAATTCATCGAAGATCTAaggtttcttcttcttcttcttcttctttttctttctctgTTTATACTGCTCCAACACATCGCGAGCTCCACCGTCGACGCGTCTCGTACATGCATCTTGGCTGCCTCAGAGACTTGGCAAAGTCGATTGGGACCAAAGGGTTGGTAGTTGGACAAGTGGTCGATATAGCTACAATGGGGGGAAAAGACTTAAGAATGGAACAACTTGAGTTCATCCA...

CDS

Download CDS FASTA

333 bp · LXL04_032929|LXL04_032929|OH1004|CDS

ATGAAATGTAGTAAACCCAATTTCAAAATTCATCGAAGATCTAAGGTTTCTTCTTCTTCTTCTTCTTCTTTTTCTTTCTCTGTTTATACTGCTCCAACACATCGCGAGCTCCACCGTCGACGCGTCTCGTACATGCATCTTGGCTGCCTCAGAGACTTGGCAAAGTCGATTGGGACCAAAGGGTTGGTAGTTGGACAAGTGGTCGATATAGCTACAATGGGGGGAAAAGACTTAAGAATGGAACAACTTGAGTTCATCCA...

Protein

Download Protein FASTA

110 aa · LXL04_032929|LXL04_032929|OH1004|PROTEIN

MKCSKPNFKIHRRSKVSSSSSSSFSFSVYTAPTHRELHRRRVSYMHLGCLRDLAKSIGTKGLVVGQVVDIATMGGKDLRMEQLEFIHFHNTMTILELVFVLGVILGGVKN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032929`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032929

Location Chr07:31835394-31835726 (-)

Description Similar to GGPS1: Geranylgeranyl pyrophosphate synthase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g14510`	Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate.	No verified direct reference in this release
`At4g36810`	Heterodimeric geranyl(geranyl)-diphosphate (GPP) synthase large subunit.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032929 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006720 isoprenoid metabolic process Biological Process

GO:0008299 isoprenoid biosynthetic process Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0016117 carotenoid biosynthetic process Biological Process

GO:0033384 geranyl diphosphate biosynthetic process Biological Process

GO:0033386 geranylgeranyl diphosphate biosynthetic process Biological Process

GO:0043693 monoterpene biosynthetic process Biological Process

GO:0045337 farnesyl diphosphate biosynthetic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009513 etioplast Cellular Component

GO:0009536 plastid Cellular Component

KEGG gene cross-reference

ath:AT3G14510

ath:AT4G36810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.408

Rank 1 · LXL04_032929 · OH-1004

Mitochondrion0.308

Rank 2 · LXL04_032929 · OH-1004

Nucleus0.125

Rank 3 · LXL04_032929 · OH-1004

Cytoplasm0.106

Rank 4 · LXL04_032929 · OH-1004

Endoplasmic reticulum0.055

Rank 5 · LXL04_032929 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LRR0`	Arabidopsis thaliana	Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic	51.724%	Swiss-Prot	moderate database homology
`P34802`	Arabidopsis thaliana	Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic	56.897%	Swiss-Prot	moderate database homology

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