Gene Card
Gene overview
cDNA / CDS / Protein Sequences
573 bp · LXL04_032789|LXL04_032789|OH1004|cDNA
ATGATGGAGACCACAAATGGAACGGTGGAGAAAGAGACGAAGACGGTGGAAGCAGACGGAGATCAGAAAAAGACGATGAATATCTGGATAGCCGTCGATGAGAGTGACGGCAGTTTCTATGCTCTCGAATGGGCTCTCCAACACCTCTTCCTCCACCACGACACCACCGACGCCGACAAAAGCTCCTCCTTCACAGTCACCGTCGTTCACGTCCAACCTCCCTTTCAGCCCACTTACACCGCCCTCCCTGTCGGCCCTAT...
573 bp · LXL04_032789|LXL04_032789|OH1004|CDS
ATGATGGAGACCACAAATGGAACGGTGGAGAAAGAGACGAAGACGGTGGAAGCAGACGGAGATCAGAAAAAGACGATGAATATCTGGATAGCCGTCGATGAGAGTGACGGCAGTTTCTATGCTCTCGAATGGGCTCTCCAACACCTCTTCCTCCACCACGACACCACCGACGCCGACAAAAGCTCCTCCTTCACAGTCACCGTCGTTCACGTCCAACCTCCCTTTCAGCCCACTTACACCGCCCTCCCTGTCGGCCCTAT...
Protein
Download Protein FASTA190 aa · LXL04_032789|LXL04_032789|OH1004|PROTEIN
MMETTNGTVEKETKTVEADGDQKKTMNIWIAVDESDGSFYALEWALQHLFLHHDTTDADKSSSFTVTVVHVQPPFQPTYTALPVGPILFATSGMKESVLKAEEESAAKVLARASELCDQNKITAEYLVLKGNPKEILVEAVDQMDVDLLVVGSRGLGQIKRAVLGSISDYCAHHAKCPVLIVRPPKESQN
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_032789 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_032789 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr07:29332539-29333645 (-) | ||||||
| Description | Similar to At3g01520: Universal stress protein A-like protein | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0005524 ATP binding Molecular Function GO:0016208 AMP binding Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT3G01520 bsu:BSU09690 bsu:BSU39250 msb:LJ00_19630 msg:MSMEI_3859 msm:MSMEG_3950 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00582.33Usp27-183 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_032789 | PF00582.33 | Usp | 27 | 183 | 2.1e-29 | 103.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q8LGG8 | Arabidopsis thaliana | Universal stress protein A-like protein | 25.175% | Swiss-Prot | weak database homology |