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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_032104
Reference: OH-1004 Chr: Chr07 Coordinates: 16818659-16844872 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

8280 bp · LXL04_032104|LXL04_032104|OH1004|cDNA

ATGATGACTTCTAACTTTACCATCAACAACATTTCATGGGTTGAGCGCGCACCACCCTTTCAAGTGTCATATGGGGAATTAAGGCTGGAGGGAGTGGCCTCGCCATCCCTCTTGCCGTTCCTCGCCAAGTCCTCGCCAAACCACACCCCCAGCTTCGCCTTCGCCTTCGCTGTTCCAGGCTTCGTCCTCTTCTCAGCGACTACTAGTAGTATACGGTTAGGGAGTTTAAGGGCAGGGAGTGGAAGATCGACGAGTTTAAG...

CDS

Download CDS FASTA

8280 bp · LXL04_032104|LXL04_032104|OH1004|CDS

ATGATGACTTCTAACTTTACCATCAACAACATTTCATGGGTTGAGCGCGCACCACCCTTTCAAGTGTCATATGGGGAATTAAGGCTGGAGGGAGTGGCCTCGCCATCCCTCTTGCCGTTCCTCGCCAAGTCCTCGCCAAACCACACCCCCAGCTTCGCCTTCGCCTTCGCTGTTCCAGGCTTCGTCCTCTTCTCAGCGACTACTAGTAGTATACGGTTAGGGAGTTTAAGGGCAGGGAGTGGAAGATCGACGAGTTTAAG...

Protein

Download Protein FASTA

2759 aa · LXL04_032104|LXL04_032104|OH1004|PROTEIN

MMTSNFTINNISWVERAPPFQVSYGELRLEGVASPSLLPFLAKSSPNHTPSFAFAFAVPGFVLFSATTSSIRLGSLRAGSGRSTSLRSGSTSVWRNSGMDVFSRSSREEDDEEALKWASLEKLPTFDRLRKGLLFGSRGPSNEVDVDDLGSDQRQHLLDRLVKVADEDNEKFLLKLRNRIDRVGIDLPTIEVKFEHLTVEADVNTGSRALPSFINFHIDIFEGFLSMFHLLPNSKKHITILDDVSGVVKPSRMTLLLGPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_032104
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_032104
LocationChr07:16818659-16844872 (-)
DescriptionSimilar to PDR1: Pleiotropic drug resistance protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g15520 May participate in transmembrane ABA import and associated signaling.
PDR-type ABC transporter mediates cellular uptake of the phytohormone abscisic acid.2010 · DOI: 10.1073/pnas.0909222107
ABA transport factors found in Arabidopsis ABC transporters.2010 · DOI: 10.4161/psb.5.9.12566
Arabidopsis Lectin Receptor Kinases LecRK-IX.1 and LecRK-IX.2 Are Functional Analogs in Regulating Phytophthora Resistance and Plant Cell Death.2015 · DOI: 10.1094/mpmi-02-15-0025-r
Abscisic acid transporters cooperate to control seed germination.2015 · DOI: 10.1038/ncomms9113

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032104 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0009914 hormone transport Biological Process
GO:2000032 regulation of secondary shoot formation Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0140359 ABC-type transporter activity Molecular Function
KEGG gene cross-reference
nta:107799533
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.598
Rank 1 · LXL04_032104 · OH-1004
Endoplasmic reticulum0.180
Rank 2 · LXL04_032104 · OH-1004
Lysosome / Vacuole0.129
Rank 3 · LXL04_032104 · OH-1004
Cytoplasm0.100
Rank 4 · LXL04_032104 · OH-1004
Golgi apparatus0.073
Rank 5 · LXL04_032104 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14510.12ABC_trans_N166-216 aa
PF00005.34ABC_tran241-423 aa
PF19055.7ABC2_membrane_7456-508 aa
PF01061.30ABC2_membrane577-698 aa
PF01061.30ABC2_membrane695-766 aa
PF08370.17PDR_assoc771-830 aa
PF00005.34ABC_tran893-1045 aa
PF01061.30ABC2_membrane1191-1404 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_032104PF14510.12ABC_trans_N1662162.7e-1660.4
LXL04_032104PF00005.34ABC_tran2414235e-79264.3
LXL04_032104PF19055.7ABC2_membrane_74565083.1e-2486.3
LXL04_032104PF01061.30ABC2_membrane5776983e-198655.0
LXL04_032104PF01061.30ABC2_membrane6957663e-198655.0
LXL04_032104PF08370.17PDR_assoc7718304.5e-37126.3
LXL04_032104PF00005.34ABC_tran89310455e-79264.3
LXL04_032104PF01061.30ABC2_membrane119114043e-198655.0
LXL04_032104PF14510.12ABC_trans_N151215622.7e-1660.4
LXL04_032104PF00005.34ABC_tran158717695e-79264.3
LXL04_032104PF19055.7ABC2_membrane_7180218993.1e-2486.3
LXL04_032104PF01061.30ABC2_membrane192321353e-198655.0
LXL04_032104PF08370.17PDR_assoc214422044.5e-37126.3
LXL04_032104PF00005.34ABC_tran226924215e-79264.3
LXL04_032104PF01061.30ABC2_membrane256727533e-198655.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M9E1Arabidopsis thalianaABC transporter G family member 4067.653%Swiss-Protweak database homology

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