Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1674 bp · LXL04_031368|LXL04_031368|OH1004|cDNA
ATGGGGCATTATAATGTCGTTTTACCCTGGGCATGTAAAATCATTGGAACCAGACGCACCGTCTACACCCACACCCAAAGATATAATCATTTTTGTTCGCTATCAATGAACGGTTGCCAAACTCGAGACCCAACAACTCCTGTCGGGATCACTGAAACTCGGACTTTTCCGTCTGTATCAACACCTGCCATGGCAATGGAGCGACTCAGTTCTGCCATTACTGAGTTGGGGTCCGACCCGCCCGTGTTCAGGTCCGGAAT...
1674 bp · LXL04_031368|LXL04_031368|OH1004|CDS
ATGGGGCATTATAATGTCGTTTTACCCTGGGCATGTAAAATCATTGGAACCAGACGCACCGTCTACACCCACACCCAAAGATATAATCATTTTTGTTCGCTATCAATGAACGGTTGCCAAACTCGAGACCCAACAACTCCTGTCGGGATCACTGAAACTCGGACTTTTCCGTCTGTATCAACACCTGCCATGGCAATGGAGCGACTCAGTTCTGCCATTACTGAGTTGGGGTCCGACCCGCCCGTGTTCAGGTCCGGAAT...
Protein
Download Protein FASTA557 aa · LXL04_031368|LXL04_031368|OH1004|PROTEIN
MGHYNVVLPWACKIIGTRRTVYTHTQRYNHFCSLSMNGCQTRDPTTPVGITETRTFPSVSTPAMAMERLSSAITELGSDPPVFRSGILRLEVPIDQQMEAIDWLRGQQQFQHLPRCFFSGRRQRRINGSPSPSNSLFDYDTLSPLSVAGLGSAVFFRHFTPFSLHHWRSIKRFLSKKCSLIRAYGAIRFDALANISSEWEAFGSFYFIIPQVEFNEFEGSSMLVTTIAWDESLSWTFGEAVHALEATMRQVSSNIVKLRK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_031368 |
|---|---|
| TK1151 ID | TkA08G103180 |
| OH-1004 ID | LXL04_031368 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_031368 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:5030656-5033505 (+) | |||||||||
| Description | Similar to Isochorismate synthase, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006952 defense response Biological Process GO:0009234 menaquinone biosynthetic process Biological Process GO:0009409 response to cold Biological Process GO:0009617 response to bacterium Biological Process GO:0009627 systemic acquired resistance Biological Process GO:0009697 salicylic acid biosynthetic process Biological Process GO:0010118 stomatal movement Biological Process GO:0031348 negative regulation of defense response Biological Process GO:0042372 phylloquinone biosynthetic process Biological Process GO:0042742 defense response to bacterium Biological Process GO:0042864 pyochelin biosynthetic process Biological Process GO:0050829 defense response to Gram-negative bacterium Biological Process | |||||||||
| KEGG gene cross-reference | ag:CAA06837 ath:AT1G18870 ath:AT1G74710 bsu:BSU30830 pae:PA4231 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00425.26Chorismate_bind170-537 aaPF30495.1Chorismate_bind_2175-538 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_031368 | PF00425.26 | Chorismate_bind | 170 | 537 | 1e-69 | 236.6 |
| LXL04_031368 | PF30495.1 | Chorismate_bind_2 | 175 | 538 | 9e-91 | 305.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.