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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_031134
Reference: OH-1004 Chr: Chr07 Coordinates: 1008782-1017619 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1794 bp · LXL04_031134|LXL04_031134|OH1004|cDNA

ATGGGTAAGATTAAGATCCGCTGCTTCTCCACTTCATTTTCTAAAGAACCTTCCATGGTTTCATGGATTTCCCCCCTTCATTACACAAAAGCCACATCACCAAAACCAGACCCCCCTCCAACAACCACCATCACACAAACCCTAAAAAACCCTAAATTTATTTCTCATGAATCAGCAATCAGATTAATAAAACACGAGAAAGATCCATACCAAATCCTTACGATCTTTAAAAAAGTAGCTAACCAAAGGGGCTTTAATCA...

CDS

Download CDS FASTA

1794 bp · LXL04_031134|LXL04_031134|OH1004|CDS

ATGGGTAAGATTAAGATCCGCTGCTTCTCCACTTCATTTTCTAAAGAACCTTCCATGGTTTCATGGATTTCCCCCCTTCATTACACAAAAGCCACATCACCAAAACCAGACCCCCCTCCAACAACCACCATCACACAAACCCTAAAAAACCCTAAATTTATTTCTCATGAATCAGCAATCAGATTAATAAAACACGAGAAAGATCCATACCAAATCCTTACGATCTTTAAAAAAGTAGCTAACCAAAGGGGCTTTAATCA...

Protein

Download Protein FASTA

597 aa · LXL04_031134|LXL04_031134|OH1004|PROTEIN

MGKIKIRCFSTSFSKEPSMVSWISPLHYTKATSPKPDPPPTTTITQTLKNPKFISHESAIRLIKHEKDPYQILTIFKKVANQRGFNHNHSTYAITLHNLAHLKHFKEVDSVLHQMSYETCKFHESIFLDLMTHFSKSSLHTKVIDMFNSIQPIVREKPSLKAVSTCLNLLVESNQVDLARSFLLDSKKTLDLHPNTCIFNILVKHHCKNGNLESAIEVMKEMKLSKVPYPNLITYSTLMEGFCKNGRLEEAIDLFEQMVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_031134
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_031134
LocationChr07:1008782-1017619 (+)
DescriptionSimilar to At5g18475: Pentatricopeptide repeat-containing protein At5g18475
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g18475 Pentatricopeptide repeat-containing protein At5g18475. No verified direct reference in this release
At1g07740 Pentatricopeptide repeat-containing protein At1g07740, mitochondrial. No verified direct reference in this release
At5g46100 Pentatricopeptide repeat-containing protein At5g46100. No verified direct reference in this release
At5g16420 Pentatricopeptide repeat-containing protein At5g16420, mitochondrial. No verified direct reference in this release
At4g20090 May play a role in embryogenesis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031134 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G07740
ath:AT5G18475
ath:AT5G46100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.732
Rank 1 · LXL04_031134 · OH-1004
Plastid0.157
Rank 2 · LXL04_031134 · OH-1004
Nucleus0.075
Rank 3 · LXL04_031134 · OH-1004
Cytoplasm0.044
Rank 4 · LXL04_031134 · OH-1004
Cell membrane0.013
Rank 5 · LXL04_031134 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N33-220 aa
PF29070.1MSC6_N159-327 aa
PF13812.13PPR_3184-242 aa
PF17177.11PPR_long186-284 aa
PF12854.14PPR_1192-223 aa
PF13041.13PPR_2194-244 aa
PF01535.27PPR198-225 aa
PF13041.13PPR_2230-280 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_031134PF29070.1MSC6_N332205.4e-2175.8
LXL04_031134PF29070.1MSC6_N1593275.4e-2175.8
LXL04_031134PF13812.13PPR_31842425.6e-29100.7
LXL04_031134PF17177.11PPR_long1862841.6e-1970.8
LXL04_031134PF12854.14PPR_11922235.9e-70231.4
LXL04_031134PF13041.13PPR_21942441.8e-71236.8
LXL04_031134PF01535.27PPR1982252.4e-51169.2
LXL04_031134PF13041.13PPR_22302801.8e-71236.8
LXL04_031134PF12854.14PPR_12302595.9e-70231.4
LXL04_031134PF13812.13PPR_32302785.6e-29100.7
LXL04_031134PF01535.27PPR2332612.4e-51169.2
LXL04_031134PF17177.11PPR_long2513981.6e-1970.8
LXL04_031134PF13812.13PPR_32553135.6e-29100.7
LXL04_031134PF12854.14PPR_12642945.9e-70231.4
LXL04_031134PF13041.13PPR_22663151.8e-71236.8
LXL04_031134PF01535.27PPR2702992.4e-51169.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3E9F0Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g1847550.641%Swiss-Protstrong database homology
Q9LQQ1Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g07740, mitochondrial29.792%Swiss-Protweak database homology
Q9FNL2Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g4610029.530%Swiss-Protweak database homology
Q9FFE3Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g16420, mitochondrial27.331%Swiss-Protweak database homology
O49436Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g2009028.788%Swiss-Protweak database homology

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