LXL04_029709 | RubberDandelionOmics

Gene overview

LXL04_029709

Reference: OH-1004 Chr: Chr06 Coordinates: 98027246-98028911 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1584 bp · LXL04_029709|LXL04_029709|OH1004|cDNA

ATGGTTACCTTCTGGTCATGGTGGTGGGAAGGGAGCAACGAAAGAGACGAGCTTGCTCGTACAATTCTCACAATTTCCGTTCCAATAATACTACTTCTATGGCACAAATTGATGTTATCGTACACCAGAAACGCCACACTTCCCTTACCGCCAGGCCCCTCCGGCTTACCGGTGGTCGGCTACCTCCCGTTTCTCACCTCCAATTTACACGAAAGATTCACCGACATGAGTCACACTTACGGCCCCATCTTCAAACTCTG...

CDS

Download CDS FASTA

1584 bp · LXL04_029709|LXL04_029709|OH1004|CDS

ATGGTTACCTTCTGGTCATGGTGGTGGGAAGGGAGCAACGAAAGAGACGAGCTTGCTCGTACAATTCTCACAATTTCCGTTCCAATAATACTACTTCTATGGCACAAATTGATGTTATCGTACACCAGAAACGCCACACTTCCCTTACCGCCAGGCCCCTCCGGCTTACCGGTGGTCGGCTACCTCCCGTTTCTCACCTCCAATTTACACGAAAGATTCACCGACATGAGTCACACTTACGGCCCCATCTTCAAACTCTG...

Protein

Download Protein FASTA

527 aa · LXL04_029709|LXL04_029709|OH1004|PROTEIN

MVTFWSWWWEGSNERDELARTILTISVPIILLLWHKLMLSYTRNATLPLPPGPSGLPVVGYLPFLTSNLHERFTDMSHTYGPIFKLWLGTKLHVVVNSVELAKVVARDLDQTFANRSPPITALTITYGALDIAWSNNNTHWRTMRKLLVSQVLSNANLDSCQDFRTEEVRKTVRNVYSKIGTKVDVNEIAFETELEVVTSMLWGRSKSGEENDSGDMFDGFREVEFKIVELLGAPNVSDFIPILSWFDLQGRKREMEKLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029709`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029709

Location Chr06:98027246-98028911 (-)

Description Similar to CYP76C1: Cytochrome P450 76C1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45560`	Cytochrome P450 76C1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029709 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009813 flavonoid biosynthetic process Biological Process

GO:0016099 monoterpenoid biosynthetic process Biological Process

GO:0016114 terpenoid biosynthetic process Biological Process

GO:0080027 response to herbivore Biological Process

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0010333 terpene synthase activity Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

KEGG gene cross-reference

ag:CAC80883

ath:AT2G45560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.907

Rank 1 · LXL04_029709 · OH-1004

Plastid0.046

Rank 2 · LXL04_029709 · OH-1004

Cell membrane0.038

Rank 3 · LXL04_029709 · OH-1004

Cytoplasm0.028

Rank 4 · LXL04_029709 · OH-1004

Golgi apparatus0.027

Rank 5 · LXL04_029709 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45050-511 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029709	`PF00067.28`	p450	50	511	8.9e-99	332.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O64636`	Arabidopsis thaliana	Cytochrome P450 76C1	36.289%	Swiss-Prot	moderate database homology

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