LXL04_029221 | RubberDandelionOmics

Gene overview

LXL04_029221

Reference: OH-1004 Chr: Chr06 Coordinates: 84077288-84080252 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

759 bp · LXL04_029221|LXL04_029221|OH1004|cDNA

ATGCAGGCTATGATAATCAACAAGGGTATATCGGTCAAAGTGATAATCAAAATGCAGGCTATGATAATCAAGTATGATCAGAGAGTAAGAGCGCTCCTAGACTTCAGCATTTACTTGGACATAAGTAACAAGGTTAAATTCGCATGGAAAATTCAGAGGGACATAGCAGAGAGAGGACACAGTCTTGAAAGCATCAAAGCTAGCATCGATGCTAGAAAACCAGATTTTGATGCTTATATTGAtcctcaaaagcagtacgc...

CDS

Download CDS FASTA

759 bp · LXL04_029221|LXL04_029221|OH1004|CDS

ATGCAGGCTATGATAATCAACAAGGGTATATCGGTCAAAGTGATAATCAAAATGCAGGCTATGATAATCAAGTATGATCAGAGAGTAAGAGCGCTCCTAGACTTCAGCATTTACTTGGACATAAGTAACAAGGTTAAATTCGCATGGAAAATTCAGAGGGACATAGCAGAGAGAGGACACAGTCTTGAAAGCATCAAAGCTAGCATCGATGCTAGAAAACCAGATTTTGATGCTTATATTGATCCTCAAAAGCAGTACGC...

Protein

Download Protein FASTA

252 aa · LXL04_029221|LXL04_029221|OH1004|PROTEIN

MQAMIINKGISVKVIIKMQAMIIKYDQRVRALLDFSIYLDISNKVKFAWKIQRDIAERGHSLESIKASIDARKPDFDAYIDPQKQYADAVIEVLPTQLILNDKEGKVLRVKLITKEEVPYINPVYLFDEAPPSHASHAERSSLAHIPASVSHMVQAFILGMSSIFLQVSVLEIDGQFDRLDELIYIESHLSNISTKFYGEITQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQTAANKKSAPFQSTNIEV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029221`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029221

Location Chr06:84077288-84080252 (-)

Description Similar to Phosphoribulokinase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32060`	Phosphoribulokinase, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029221 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0019253 reductive pentose-phosphate cycle Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0010319 stromule Cellular Component

GO:0048046 apoplast Cellular Component

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G32060

cre:CHLRE_12g554800v5

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.506

Rank 1 · LXL04_029221 · OH-1004

Nucleus0.273

Rank 2 · LXL04_029221 · OH-1004

Endoplasmic reticulum0.161

Rank 3 · LXL04_029221 · OH-1004

Mitochondrion0.125

Rank 4 · LXL04_029221 · OH-1004

Cell membrane0.099

Rank 5 · LXL04_029221 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00485.25PRK24-99 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029221	`PF00485.25`	PRK	24	99	4.7e-30	105.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P25697`	Arabidopsis thaliana	Phosphoribulokinase, chloroplastic	69.658%	Swiss-Prot	strong database homology

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