LXL04_028314 | RubberDandelionOmics

Gene overview

LXL04_028314

Reference: OH-1004 Chr: Chr06 Coordinates: 37389101-37390946 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

466 bp · LXL04_028314|LXL04_028314|OH1004|cDNA

ATGGTGACGCTTGGCAGCACACTAGCGGTGGATGACAACGAAGCACGGTGGCCACCGATGGCACTAATGATGGTAGTGGATTGTGAGATCGTGATAGGCGTTGGAGACCCTTTGGCGATTTCCGGCGAGCGACGCGATTTTCGGCGACCATCTCGACGTTGCTGCCGACCTTTTGTGATTGCTGATGAGAAGCTGCCTCCTGCGCGGTGCTTCCTCGTTTCTCTGGTCACCAAGCATTTGCGATTTCCGACGTTGTAATT...

CDS

Download CDS FASTA

288 bp · LXL04_028314|LXL04_028314|OH1004|CDS

TTGCTGATGAGAAGCTGCCTCCTGCGCGGTGCTTCCTCGTTTCTCTGGTCACCAAGCATTTGCGATTTCCGACGTTGTAATTCCGACGTTGCTGCTGGTTCTTTCGCGAGACCTAATTTCCGGCACGAGTTAGCTAATATACGGTATCTGAAGTACCTAACTAAGAAATACTTGAAGAAACACAATGTGAGGGATTGGCTTCGGGTGATTGCTTCAAAGAAAGATCGCAATGTGTATGAGTTGCGATACTTCAACATTGC...

Protein

Download Protein FASTA

95 aa · LXL04_028314|LXL04_028314|OH1004|PROTEIN

MLMRSCLLRGASSFLWSPSICDFRRCNSDVAAGSFARPNFRHELANIRYLKYLTKKYLKKHNVRDWLRVIASKKDRNVYELRYFNIAENEGEEED

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028314`
TK1151 ID	TkA07G141750
OH-1004 ID	LXL04_028314
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.800
Protein coverage (%)	TK1151 52.500 / OH-1004 88.421 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028314

Location Chr06:37389101-37390946 (-)

Description Similar to RPL22B: 60S ribosomal protein L22-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g05560`	Large ribosomal subunit protein eL22z.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028314 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002181 cytoplasmic translation Biological Process

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005840 ribosome Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0030684 preribosome Cellular Component

GO:1990904 ribonucleoprotein complex Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G05560

cel:CELE_C27A2.2

ddi:DDB_G0288101

ddi:DDB_G0290091

spo:2543021

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.927

Rank 1 · LXL04_028314 · OH-1004

Nucleus0.057

Rank 2 · LXL04_028314 · OH-1004

Cytoplasm0.041

Rank 3 · LXL04_028314 · OH-1004

Cell membrane0.010

Rank 4 · LXL04_028314 · OH-1004

Plastid0.008

Rank 5 · LXL04_028314 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01776.23Ribosomal_L22e47-94 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028314	`PF01776.23`	Ribosomal_L22e	47	94	2e-18	67.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M9W1`	Arabidopsis thaliana	Large ribosomal subunit protein eL22z	91.429%	Swiss-Prot	weak database homology

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