LXL04_026796 | RubberDandelionOmics

Gene overview

LXL04_026796

Reference: OH-1004 Chr: Chr06 Coordinates: 3059939-3061540 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

993 bp · LXL04_026796|LXL04_026796|OH1004|cDNA

ATGGATCAAGAAGACCACCAATCTCGGCCGTTACAACCGCCGTATTTAGGTCAAGTACTTGTAATACGTCCGCCTCCCGTCTTTGTAGTCCACGAACAATACATCTCGACCAAATTCCAGATCCTCAAAGCATACGAATCACCATTACCAACTCACGATTTCCTCGAAGCTTATGCGCAGTCTGTCAAAGTCGTTTTATGCTCAGCCAACGGTCCGATCACAGCCGCCGTGTTACGTGACCTTCCGGCTCTCCAACTCAT...

CDS

Download CDS FASTA

993 bp · LXL04_026796|LXL04_026796|OH1004|CDS

ATGGATCAAGAAGACCACCAATCTCGGCCGTTACAACCGCCGTATTTAGGTCAAGTACTTGTAATACGTCCGCCTCCCGTCTTTGTAGTCCACGAACAATACATCTCGACCAAATTCCAGATCCTCAAAGCATACGAATCACCATTACCAACTCACGATTTCCTCGAAGCTTATGCGCAGTCTGTCAAAGTCGTTTTATGCTCAGCCAACGGTCCGATCACAGCCGCCGTGTTACGTGACCTTCCGGCTCTCCAACTCAT...

Protein

Download Protein FASTA

330 aa · LXL04_026796|LXL04_026796|OH1004|PROTEIN

MDQEDHQSRPLQPPYLGQVLVIRPPPVFVVHEQYISTKFQILKAYESPLPTHDFLEAYAQSVKVVLCSANGPITAAVLRDLPALQLIVSSTTGVNHIDMLECRRRGIRVTNTGDLFSDDVADGAVGLLIDVMRRITGGDRFVRGGRWPATSVYPLGSKLGGKRIGIVGLGNIGSSVATRLEAMGCIISYTSRHKKHSSYYTFYPNILELSVNSDALIICCALTNNTRHMVNNSVMRALGKTGVIVNVARGAIIDEVDLVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026796`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_026796

Location Chr06:3059939-3061540 (+)

Description Similar to HPR3: Glyoxylate/hydroxypyruvate reductase HPR3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12550`	Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate.	The hydroxypyruvate-reducing system in Arabidopsis: multiple enzymes for the same end.2011 · DOI: 10.1104/pp.110.166538
`At1g79870`	Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle.	A cytosolic pathway for the conversion of hydroxypyruvate to glycerate during photorespiration in Arabidopsis.2008 · DOI: 10.1105/tpc.108.062265 The hydroxypyruvate-reducing system in Arabidopsis: multiple enzymes for the same end.2011 · DOI: 10.1104/pp.110.166538

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026796 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009853 photorespiration Biological Process

GO:0009854 oxidative photosynthetic carbon pathway Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008465 hydroxypyruvate reductase (NADH) activity Molecular Function

GO:0008720 D-lactate dehydrogenase (NAD+) activity Molecular Function

GO:0016618 hydroxypyruvate reductase [NAD(P)H] activity Molecular Function

GO:0030267 glyoxylate reductase (NADPH) activity Molecular Function

GO:0047964 glyoxylate reductase (NADH) activity Molecular Function

GO:0047995 (2R)-hydroxyphenylpyruvate reductase [NAD(P)H] activity Molecular Function

KEGG gene cross-reference

ag:CAD47810

ath:AT1G12550

ath:AT1G79870

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.580

Rank 1 · LXL04_026796 · OH-1004

Nucleus0.253

Rank 2 · LXL04_026796 · OH-1004

Peroxisome0.182

Rank 3 · LXL04_026796 · OH-1004

Plastid0.105

Rank 4 · LXL04_026796 · OH-1004

Mitochondrion0.090

Rank 5 · LXL04_026796 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00389.372-Hacid_dh44-329 aa

PF02826.262-Hacid_dh_C125-297 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026796	`PF00389.37`	2-Hacid_dh	44	329	3e-19	69.7
LXL04_026796	`PF02826.26`	2-Hacid_dh_C	125	297	4.3e-47	160.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LE33`	Arabidopsis thaliana	Glyoxylate/hydroxypyruvate reductase HPR3	50.779%	Swiss-Prot	strong database homology
`Q9CA90`	Arabidopsis thaliana	Glyoxylate/hydroxypyruvate reductase A HPR2	43.750%	Swiss-Prot	moderate database homology

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