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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_026785
Reference: OH-1004 Chr: Chr06 Coordinates: 2845569-2853355 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2778 bp · LXL04_026785|LXL04_026785|OH1004|cDNA

ATGATACGATCAAGGTGCATCCTCAAACAAGCCCCAGATCACTTCATCATCAAATTCAAATCCTTCTCATCCCTTCTCCTCCATTTCTCCGGTTCCCCTTCACCCATTGAAGAAGAAACCGAACACGATTTCGCATCTCGGTTACTCTCCCTCCTCTCCCTACCCGATTGGCAAAAAAACCCACGTCTCAAAACCCTACTCCCCTTGATTTCTCCATCGCATATCGCGTCTCTGTTCAACAGTAACCCTAATTTGAAGCC...

CDS

Download CDS FASTA

2778 bp · LXL04_026785|LXL04_026785|OH1004|CDS

ATGATACGATCAAGGTGCATCCTCAAACAAGCCCCAGATCACTTCATCATCAAATTCAAATCCTTCTCATCCCTTCTCCTCCATTTCTCCGGTTCCCCTTCACCCATTGAAGAAGAAACCGAACACGATTTCGCATCTCGGTTACTCTCCCTCCTCTCCCTACCCGATTGGCAAAAAAACCCACGTCTCAAAACCCTACTCCCCTTGATTTCTCCATCGCATATCGCGTCTCTGTTCAACAGTAACCCTAATTTGAAGCC...

Protein

Download Protein FASTA

925 aa · LXL04_026785|LXL04_026785|OH1004|PROTEIN

MIRSRCILKQAPDHFIIKFKSFSSLLLHFSGSPSPIEEETEHDFASRLLSLLSLPDWQKNPRLKTLLPLISPSHIASLFNSNPNLKPQTALSFFNVLSQRSSFKPSVESFASLLTILIRNRFLNVAEKIRISMVKACETEEDARFVLSFLRKTNVDDGEEIECKFKLSIRCYNTLLMCLSRFSMIDELKCVFLEMLDDEIKPNIYTYNTMVNGYSKLGKVDMAALYVSKIVQAGLTPDTHTYTSLILGHCRNKDVDSAHK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_026785
TK1151 IDTkA07G007370
OH-1004 IDLXL04_026785
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 99.665 / OH-1004 96.432
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_026785
LocationChr06:2845569-2853355 (+)
DescriptionSimilar to At5g65560: Pentatricopeptide repeat-containing protein At5g65560
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g65560 Pentatricopeptide repeat-containing protein At5g65560. No verified direct reference in this release
At3g07290 Pentatricopeptide repeat-containing protein At3g07290, mitochondrial. No verified direct reference in this release
At5g59900 Putative pentatricopeptide repeat-containing protein At5g59900. No verified direct reference in this release
At1g62670 Pentatricopeptide repeat-containing protein At1g62670, mitochondrial. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q76C99 Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026785 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G07290
ath:AT5G65560
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.819
Rank 1 · LXL04_026785 · OH-1004
Plastid0.100
Rank 2 · LXL04_026785 · OH-1004
Nucleus0.055
Rank 3 · LXL04_026785 · OH-1004
Cytoplasm0.035
Rank 4 · LXL04_026785 · OH-1004
Cell membrane0.012
Rank 5 · LXL04_026785 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177.11PPR_long128-281 aa
PF13041.13PPR_2169-216 aa
PF12854.14PPR_1199-223 aa
PF13041.13PPR_2204-251 aa
PF01535.27PPR205-234 aa
PF13812.13PPR_3229-281 aa
PF29070.1MSC6_N229-404 aa
PF12854.14PPR_1234-265 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_026785PF17177.11PPR_long1282811.1e-59202.1
LXL04_026785PF13041.13PPR_21692163e-177575.4
LXL04_026785PF12854.14PPR_11992238.3e-147477.3
LXL04_026785PF13041.13PPR_22042513e-177575.4
LXL04_026785PF01535.27PPR2052341.5e-121389.2
LXL04_026785PF13812.13PPR_32292815.2e-77254.6
LXL04_026785PF29070.1MSC6_N2294041.2e-44153.7
LXL04_026785PF12854.14PPR_12342658.3e-147477.3
LXL04_026785PF13041.13PPR_22372853e-177575.4
LXL04_026785PF01535.27PPR2412701.5e-121389.2
LXL04_026785PF23276.3TPR_242513383.1e-53180.0
LXL04_026785PF12854.14PPR_12683008.3e-147477.3
LXL04_026785PF13041.13PPR_22733213e-177575.4
LXL04_026785PF01535.27PPR2753051.5e-121389.2
LXL04_026785PF17177.11PPR_long2904071.1e-59202.1
LXL04_026785PF13812.13PPR_32953545.2e-77254.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LSL9Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g6556048.409%Swiss-Protmoderate database homology
Q9SFV9Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g07290, mitochondrial34.030%Swiss-Protmoderate database homology
Q9FJE6Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At5g5990027.805%Swiss-Protweak database homology
Q9SXD1Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g62670, mitochondrial29.745%Swiss-Protweak database homology
Q76C99Oryza sativa subsp. indicaProtein Rf1, mitochondrial27.389%Swiss-Protweak database homology

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