LXL04_026691 | RubberDandelionOmics

Gene overview

LXL04_026691

Reference: OH-1004 Chr: Chr06 Coordinates: 1468321-1472354 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1644 bp · LXL04_026691|LXL04_026691|OH1004|cDNA

ATGTCAGAATTCTATGCGGCGGAGACGGCGACAACCGCCACCGTCAGATCACAGACGGAGTATATGAAGGGAAATGAGAAGAAGATTGTAGAAACGAACATAAACCAAGCTTGGGCATCTATTCAGACCGGAGTCTTCGATAATCCGTTGGTTTACACCCAAACCTGTACTACTTTAGGAAGCACTATCGATTCAGCTATCGCGACAAATGCAGTTCCATCATCATCTCATCTGCCTCAGCTACATTTGATTGTTAGAGA...

CDS

Download CDS FASTA

1644 bp · LXL04_026691|LXL04_026691|OH1004|CDS

ATGTCAGAATTCTATGCGGCGGAGACGGCGACAACCGCCACCGTCAGATCACAGACGGAGTATATGAAGGGAAATGAGAAGAAGATTGTAGAAACGAACATAAACCAAGCTTGGGCATCTATTCAGACCGGAGTCTTCGATAATCCGTTGGTTTACACCCAAACCTGTACTACTTTAGGAAGCACTATCGATTCAGCTATCGCGACAAATGCAGTTCCATCATCATCTCATCTGCCTCAGCTACATTTGATTGTTAGAGA...

Protein

Download Protein FASTA

547 aa · LXL04_026691|LXL04_026691|OH1004|PROTEIN

MSEFYAAETATTATVRSQTEYMKGNEKKIVETNINQAWASIQTGVFDNPLVYTQTCTTLGSTIDSAIATNAVPSSSHLPQLHLIVREVYRLMAELQQPSLMLLMLPIKAACKVGWFPDGVKADLLMMADKVCSMFSDTDKMRIEPSYVHSCVPKIILRFYPTMKVETILTSFNVKAGYGTFVVDFHISQGTLPRQCRNLWLLVARMDNMETAACIASPSNVNFLINGSEVPRRTKSNMGKGPQLPSNVTKMIKYGVNLLQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026691`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026691

Location Chr06:1468321-1472354 (+)

Description Similar to PIAL2: E4 SUMO-protein ligase PIAL2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g41580`	Together with MOM1 and PIAL1, regulates transcriptional gene silencing (TGS) independently of changes in DNA methylation.	Arabidopsis PIAL1 and 2 promote SUMO chain formation as E4-type SUMO ligases and are involved in stress responses and sulfur metabolism.2014 · DOI: 10.1105/tpc.114.131300 The SUMO E3 Ligase-Like Proteins PIAL1 and PIAL2 Interact with MOM1 and Form a Novel Complex Required for Transcriptional Silencing.2016 · DOI: 10.1105/tpc.15.00997
`At1g08910`	Together with MOM1 and PIAL2, regulates transcriptional gene silencing (TGS) independently of changes in DNA methylation.	Arabidopsis PIAL1 and 2 promote SUMO chain formation as E4-type SUMO ligases and are involved in stress responses and sulfur metabolism.2014 · DOI: 10.1105/tpc.114.131300 The SUMO E3 Ligase-Like Proteins PIAL1 and PIAL2 Interact with MOM1 and Form a Novel Complex Required for Transcriptional Silencing.2016 · DOI: 10.1105/tpc.15.00997

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026691 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000082 G1/S transition of mitotic cell cycle Biological Process

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0006974 DNA damage response Biological Process

GO:0007059 chromosome segregation Biological Process

GO:0007259 cell surface receptor signaling pathway via JAK-STAT Biological Process

GO:0007283 spermatogenesis Biological Process

GO:0016925 protein sumoylation Biological Process

GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0032480 negative regulation of type I interferon production Biological Process

GO:0033235 positive regulation of protein sumoylation Biological Process

KEGG gene cross-reference

ath:AT1G08910

ath:AT5G41580

dre:406712

hsa:8554

sce:YOR156C

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.691

Rank 1 · LXL04_026691 · OH-1004

Cytoplasm0.335

Rank 2 · LXL04_026691 · OH-1004

Cell membrane0.047

Rank 3 · LXL04_026691 · OH-1004

Mitochondrion0.035

Rank 4 · LXL04_026691 · OH-1004

Endoplasmic reticulum0.032

Rank 5 · LXL04_026691 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26716.1PIAL1_N30-177 aa

PF02891.27zf-MIZ296-336 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026691	`PF26716.1`	PIAL1_N	30	177	2.8e-40	138.4
LXL04_026691	`PF02891.27`	zf-MIZ	296	336	6.4e-16	58.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JYG0`	Arabidopsis thaliana	E4 SUMO-protein ligase PIAL2	35.537%	Swiss-Prot	moderate database homology
`A0A0A7EPL0`	Arabidopsis thaliana	E4 SUMO-protein ligase PIAL1	34.959%	Swiss-Prot	moderate database homology

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