LXL04_025262 | RubberDandelionOmics

Gene overview

LXL04_025262

Reference: OH-1004 Chr: Chr05 Coordinates: 108876551-108877886 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

951 bp · LXL04_025262|LXL04_025262|OH1004|cDNA

ATGGCAAACATTCTCCTTTTCTTCCATGTTATCTTTAGCGGTTTACTGTTATCAGTTTCTTCTCGAGGTCCCGTGTATCGGCCACCACCAGTTGAGCAATTAACAAACCGTTTCCCTCATATTCCCATCACCCAAGGGATGTCGACATTGTTTGGATCATCAAATATTCATGTGAAAGGCAATGGATCATATGCCGATATCGTTTTGGACAAAATCTCAGGTTCTGGGTTGATTTCAAAGAACAGATACTACCATGGATT...

CDS

Download CDS FASTA

951 bp · LXL04_025262|LXL04_025262|OH1004|CDS

ATGGCAAACATTCTCCTTTTCTTCCATGTTATCTTTAGCGGTTTACTGTTATCAGTTTCTTCTCGAGGTCCCGTGTATCGGCCACCACCAGTTGAGCAATTAACAAACCGTTTCCCTCATATTCCCATCACCCAAGGGATGTCGACATTGTTTGGATCATCAAATATTCATGTGAAAGGCAATGGATCATATGCCGATATCGTTTTGGACAAAATCTCAGGTTCTGGGTTGATTTCAAAGAACAGATACTACCATGGATT...

Protein

Download Protein FASTA

316 aa · LXL04_025262|LXL04_025262|OH1004|PROTEIN

MANILLFFHVIFSGLLLSVSSRGPVYRPPPVEQLTNRFPHIPITQGMSTLFGSSNIHVKGNGSYADIVLDKISGSGLISKNRYYHGFFSAAIKLPTGFTSGVVFAFYMSNADLFPHNHDEIDFELLGHEKRRQWVLQTNMYGNGSVKTGREEKVYLWFDPTQQFHQYTILWNNHHIVFLVDNIPVREVIHNQAVSSVYPSKPMSLYATIWDASEWATHGGKYAVNYKYAPFVASMGELEIEGCSMQKTSSPSMATAGCSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025262`
TK1151 ID	TkA06G071190
OH-1004 ID	LXL04_025262
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_025262

Location Chr05:108876551-108877886 (-)

Description Similar to XTH33: Probable xyloglucan endotransglucosylase/hydrolase protein 33

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g10550`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At2g01850`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	AtXTH27 plays an essential role in cell wall modification during the development of tracheary elements.2005 · DOI: 10.1111/j.1365-313x.2005.02395.x
`At1g14720`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At1g32170`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At4g18990`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025262 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009831 plant-type cell wall modification involved in multidimensional cell growth Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0010154 fruit development Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0071555 cell wall organization Biological Process

GO:0080086 stamen filament development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Molecular Function

GO:0016762 xyloglucan:xyloglucosyl transferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G10550

ath:AT1G14720

ath:AT1G32170

ath:AT2G01850

ath:AT4G18990

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.270

Rank 1 · LXL04_025262 · OH-1004

Golgi apparatus0.237

Rank 2 · LXL04_025262 · OH-1004

Lysosome / Vacuole0.187

Rank 3 · LXL04_025262 · OH-1004

Cell membrane0.138

Rank 4 · LXL04_025262 · OH-1004

Cytoplasm0.105

Rank 5 · LXL04_025262 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00722.29Glyco_hydro_1650-227 aa

PF06955.20XET_C277-313 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025262	`PF00722.29`	Glyco_hydro_16	50	227	1.3e-52	178.5
LXL04_025262	`PF06955.20`	XET_C	277	313	1.1e-13	51.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LC45`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 33	58.689%	Swiss-Prot	strong database homology
`Q8LDS2`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 27	43.590%	Swiss-Prot	moderate database homology
`Q38909`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 28	47.122%	Swiss-Prot	moderate database homology
`Q38908`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 30	46.886%	Swiss-Prot	moderate database homology
`Q8L7H3`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 29	43.636%	Swiss-Prot	moderate database homology

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