LXL04_025214 | RubberDandelionOmics

Gene overview

LXL04_025214

Reference: OH-1004 Chr: Chr05 Coordinates: 107868401-107869809 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

858 bp · LXL04_025214|LXL04_025214|OH1004|cDNA

ATGGAAATGGAAGGTGGAATGGTGTTTGAAGCTTTGCTCAAAAATCAAAGCCTTTCTTTTCACTCCCCTTGGATTCCAAACTCCTTTCATGAAGAAAAAACGAACACAAAGAAGCAACCGGAAAACGAGGATAATTCCGATGATGACTACGAGAAATGTTTCCGACAACCGGAGAAGAAACGACGGCTATCGATGGATCAAGTTCAGTTTCTTGAAAGAAGTTTCGAGGAAGAGAATAAGCTTGAGCCAGAAAGAAAAAT...

CDS

Download CDS FASTA

858 bp · LXL04_025214|LXL04_025214|OH1004|CDS

ATGGAAATGGAAGGTGGAATGGTGTTTGAAGCTTTGCTCAAAAATCAAAGCCTTTCTTTTCACTCCCCTTGGATTCCAAACTCCTTTCATGAAGAAAAAACGAACACAAAGAAGCAACCGGAAAACGAGGATAATTCCGATGATGACTACGAGAAATGTTTCCGACAACCGGAGAAGAAACGACGGCTATCGATGGATCAAGTTCAGTTTCTTGAAAGAAGTTTCGAGGAAGAGAATAAGCTTGAGCCAGAAAGAAAAAT...

Protein

Download Protein FASTA

285 aa · LXL04_025214|LXL04_025214|OH1004|PROTEIN

MEMEGGMVFEALLKNQSLSFHSPWIPNSFHEEKTNTKKQPENEDNSDDDYEKCFRQPEKKRRLSMDQVQFLERSFEEENKLEPERKIQLAKELNLQPRQVAIWFQNRRARCKTKQLEKDYEILNSSYDKLKSEFDCLQKHNDTLKHEVEMLKEKLQQREKEEKDSIPSEISTKESDSNAEEQNRNPFSVETWSQEPKMVICKQEYANSVSTKSDIIDSYSDGNHSSFLEPCDSSNVFENQSDFSQDEEDNLTILRCPKIE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025214`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025214

Location Chr05:107868401-107869809 (-)

Description Similar to HAT5: Homeobox-leucine zipper protein HAT5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g01470`	Probable transcription activator involved in leaf development.	Ectopic expression of the Arabidopsis transcriptional activator Athb-1 alters leaf cell fate in tobacco.1995 · DOI: 10.1105/tpc.7.11.1773
`At2g22430`	Transcription activator that may act as growth regulators in response to water deficit.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0729700`	Probable transcription factor.	No verified direct reference in this release
`UniProt: A2X980`	Probable transcription factor.	No verified direct reference in this release
`Os09g0470500`	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'.	HD-Zip proteins of families I and II from rice: interactions and functional properties.2000 · DOI: 10.1007/pl00008671 Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses.2008 · DOI: 10.1007/s11103-007-9270-8

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025214 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009637 response to blue light Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0017148 negative regulation of translation Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

KEGG gene cross-reference

ath:AT2G22430

ath:AT3G01470

dosa:Os02g0729700

dosa:Os09g0470500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.978

Rank 1 · LXL04_025214 · OH-1004

Cytoplasm0.092

Rank 2 · LXL04_025214 · OH-1004

Cell membrane0.021

Rank 3 · LXL04_025214 · OH-1004

Endoplasmic reticulum0.011

Rank 4 · LXL04_025214 · OH-1004

Plastid0.010

Rank 5 · LXL04_025214 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00046.36Homeodomain59-112 aa

PF02183.24HALZ114-156 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025214	`PF00046.36`	Homeodomain	59	112	7.7e-17	61.6
LXL04_025214	`PF02183.24`	HALZ	114	156	3.6e-16	59.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q02283`	Arabidopsis thaliana	Homeobox-leucine zipper protein HAT5	39.827%	Swiss-Prot	moderate database homology
`P46668`	Arabidopsis thaliana	Homeobox-leucine zipper protein ATHB-6	56.800%	Swiss-Prot	weak database homology
`Q6YWR4`	Oryza sativa subsp. japonica	Homeobox-leucine zipper protein HOX16	57.895%	Swiss-Prot	weak database homology
`A2X980`	Oryza sativa subsp. indica	Homeobox-leucine zipper protein HOX16	57.895%	Swiss-Prot	weak database homology
`Q6K498`	Oryza sativa subsp. japonica	Homeobox-leucine zipper protein HOX4	57.143%	Swiss-Prot	weak database homology

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