LXL04_024892 | RubberDandelionOmics

Gene overview

LXL04_024892

Reference: OH-1004 Chr: Chr05 Coordinates: 101608359-101609351 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

993 bp · LXL04_024892|LXL04_024892|OH1004|cDNA

ATGTCTAACAACATAGCAGTAAAACAAGCTACAAAATATGAGACCCAAAGCTCCGGTGGTAATGGCCGAAAAACATCGTCGTTGCGGCCACCGGAGCAAGCCGTGAAGTGCCCAAGATGCGATTCAACAAATACCAAGTTTTGCTACTACAACAACTATAACCTTACGCAGCCCAGGCACTTTTGCAAGACATGTAGAAGGTACTGGACAAAAGGTGGAGCCTTACGCAACATCCCAATTGGAGGAGGATGCCGGAAAAA...

CDS

Download CDS FASTA

993 bp · LXL04_024892|LXL04_024892|OH1004|CDS

ATGTCTAACAACATAGCAGTAAAACAAGCTACAAAATATGAGACCCAAAGCTCCGGTGGTAATGGCCGAAAAACATCGTCGTTGCGGCCACCGGAGCAAGCCGTGAAGTGCCCAAGATGCGATTCAACAAATACCAAGTTTTGCTACTACAACAACTATAACCTTACGCAGCCCAGGCACTTTTGCAAGACATGTAGAAGGTACTGGACAAAAGGTGGAGCCTTACGCAACATCCCAATTGGAGGAGGATGCCGGAAAAA...

Protein

Download Protein FASTA

330 aa · LXL04_024892|LXL04_024892|OH1004|PROTEIN

MSNNIAVKQATKYETQSSGGNGRKTSSLRPPEQAVKCPRCDSTNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNIPIGGGCRKNKKTSKTSTSKFTIGNSSSDNGVLKLLDRHSPPVMDFQLGGINFPPRINQLFPSSYPDTSCNLPFMNLDPLGVNNFGLSNNVTKPGDHQNQSGGGIGNCQELGFTYTNNLHQNTSTLASSIESLSSLNQDLHWKLQQQRLAMLFGGGAEEEDGHQQKESSLQPILFQNLEISKP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024892`
TK1151 ID	TkA06G097690
OH-1004 ID	LXL04_024892
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.600
Protein coverage (%)	TK1151 92.239 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024892

Location Chr05:101608359-101609351 (+)

Description Similar to DOF5.7: Dof zinc finger protein DOF5.7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65590`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At5g60200`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	Mobile PEAR transcription factors integrate positional cues to prime cambial growth.2019 · DOI: 10.1038/s41586-018-0839-y
`At2g37590`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	Sequential activation of two Dof transcription factor gene promoters during vascular development in Arabidopsis thaliana.2007 · DOI: 10.1016/j.plaphy.2007.05.001 Mobile PEAR transcription factors integrate positional cues to prime cambial growth.2019 · DOI: 10.1038/s41586-018-0839-y
`At2g28810`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At3g45610`	Transcription factor that negatively affects seed germination and opposes TCP14 function in the regulation of a specific set of abscisic acid-related genes.	Arabidopsis thaliana DOF6 negatively affects germination in non-after-ripened seeds and interacts with TCP14.2012 · DOI: 10.1093/jxb/err388 Mobile PEAR transcription factors integrate positional cues to prime cambial growth.2019 · DOI: 10.1038/s41586-018-0839-y

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024892 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0010052 guard cell differentiation Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010497 plasmodesmata-mediated intercellular transport Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048364 root development Biological Process

GO:0090057 root radial pattern formation Biological Process

GO:1902066 regulation of cell wall pectin metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0055044 symplast Cellular Component

KEGG gene cross-reference

ath:AT2G28810

ath:AT2G37590

ath:AT3G45610

ath:AT5G60200

ath:AT5G65590

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.969

Rank 1 · LXL04_024892 · OH-1004

Cytoplasm0.094

Rank 2 · LXL04_024892 · OH-1004

Cell membrane0.024

Rank 3 · LXL04_024892 · OH-1004

Endoplasmic reticulum0.017

Rank 4 · LXL04_024892 · OH-1004

Plastid0.012

Rank 5 · LXL04_024892 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02701.21Zn_ribbon_Dof33-89 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024892	`PF02701.21`	Zn_ribbon_Dof	33	89	1.2e-33	115.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LSL6`	Arabidopsis thaliana	Dof zinc finger protein DOF5.7	42.857%	Swiss-Prot	moderate database homology
`Q84TE9`	Arabidopsis thaliana	Dof zinc finger protein DOF5.3	68.675%	Swiss-Prot	weak database homology
`O80928`	Arabidopsis thaliana	Dof zinc finger protein DOF2.4	42.857%	Swiss-Prot	weak database homology
`Q9ZV33`	Arabidopsis thaliana	Dof zinc finger protein DOF2.2	60.227%	Swiss-Prot	weak database homology
`Q9M1E6`	Arabidopsis thaliana	Dof zinc finger protein DOF3.2	74.627%	Swiss-Prot	weak database homology

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