LXL04_024599 | RubberDandelionOmics

Gene overview

LXL04_024599

Reference: OH-1004 Chr: Chr05 Coordinates: 94901072-94902583 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

831 bp · LXL04_024599|LXL04_024599|OH1004|cDNA

ATGGGGACTTTAGGAAGAGCAATCTACGTCGTCGGATCCTGGATCCGTGGAGCCGGCCAAGCAGTTGATCGTGTCGGCTGCAGTCTCCAAGGCAGTCACCTCTTTGAAGAACATGTGTCTAGGCATCGGACACTGATGAATGTATTTGATAAAGACCCTGTGGTTGACAAAGATGCATTTGTGGCTCCTGGTGCTTCTGTCATCGGAGATGTTCAAGTGGGGCGTGGTTCCTCTATTTGGTATGGATGTGTTCTTAGAGG...

CDS

Download CDS FASTA

831 bp · LXL04_024599|LXL04_024599|OH1004|CDS

ATGGGGACTTTAGGAAGAGCAATCTACGTCGTCGGATCCTGGATCCGTGGAGCCGGCCAAGCAGTTGATCGTGTCGGCTGCAGTCTCCAAGGCAGTCACCTCTTTGAAGAACATGTGTCTAGGCATCGGACACTGATGAATGTATTTGATAAAGACCCTGTGGTTGACAAAGATGCATTTGTGGCTCCTGGTGCTTCTGTCATCGGAGATGTTCAAGTGGGGCGTGGTTCCTCTATTTGGTATGGATGTGTTCTTAGAGG...

Protein

Download Protein FASTA

276 aa · LXL04_024599|LXL04_024599|OH1004|PROTEIN

MGTLGRAIYVVGSWIRGAGQAVDRVGCSLQGSHLFEEHVSRHRTLMNVFDKDPVVDKDAFVAPGASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNALVHVAKTNISGNVLPTTIGNNVTIGHGAVLHGCTVEDEAFVGMGATLLDGTHVEKNAMVAAGSLVRQNTRIPLGEVWGGNPARYMRKLTEEEIMFIAESARNYANLAMVHGAENKKGFEEIEMEKKLRKKFARRDEEYDSMIGVVRETPEELTLPD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024599`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_024599

Location Chr05:94901072-94902583 (+)

Description Similar to GAMMACA2: Gamma carbonic anhydrase 2, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g47260`	May participate in carbonic acid breakdown but does not mediate reversible hydration of carbon dioxide.	Disruption of a nuclear gene encoding a mitochondrial gamma carbonic anhydrase reduces complex I and supercomplex I + III2 levels and alters mitochondrial physiology in Arabidopsis.2005 · DOI: 10.1016/j.jmb.2005.04.062 Recombinant plant gamma carbonic anhydrase homotrimers bind inorganic carbon.2009 · DOI: 10.1016/j.febslet.2009.09.055
`At1g19580`	Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide.	No verified direct reference in this release
`At5g66510`	Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024599 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009853 photorespiration Biological Process

GO:0009901 anther dehiscence Biological Process

GO:0070207 protein homotrimerization Biological Process

GO:2000377 regulation of reactive oxygen species metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009536 plastid Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

GO:0045271 respiratory chain complex I Cellular Component

GO:0004089 carbonate dehydratase activity Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT1G19580

ath:AT1G47260

ath:AT5G66510

ddi:DDB_G0288155

mja:MJ_0304

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.779

Rank 1 · LXL04_024599 · OH-1004

Cytoplasm0.138

Rank 2 · LXL04_024599 · OH-1004

Plastid0.074

Rank 3 · LXL04_024599 · OH-1004

Nucleus0.071

Rank 4 · LXL04_024599 · OH-1004

Peroxisome0.044

Rank 5 · LXL04_024599 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00132.31Hexapep53-87 aa

PF25084.2LbH_EIF2B91-175 aa

PF00132.31Hexapep119-151 aa

PF14602.13Hexapep_2119-151 aa

PF00132.31Hexapep136-170 aa

PF28366.1GAMMACA1_C197-261 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024599	`PF00132.31`	Hexapep	53	87	2.9e-17	62.3
LXL04_024599	`PF25084.2`	LbH_EIF2B	91	175	4.3e-07	30.6
LXL04_024599	`PF00132.31`	Hexapep	119	151	2.9e-17	62.3
LXL04_024599	`PF14602.13`	Hexapep_2	119	151	1.5e-08	34.9
LXL04_024599	`PF00132.31`	Hexapep	136	170	2.9e-17	62.3
LXL04_024599	`PF28366.1`	GAMMACA1_C	197	261	6.4e-33	113.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C6B3`	Arabidopsis thaliana	Gamma carbonic anhydrase 2, mitochondrial	78.409%	Swiss-Prot	strong database homology
`Q9FWR5`	Arabidopsis thaliana	Gamma carbonic anhydrase 1, mitochondrial	73.993%	Swiss-Prot	strong database homology
`Q94AU7`	Arabidopsis thaliana	Gamma carbonic anhydrase 3, mitochondrial	69.084%	Swiss-Prot	strong database homology

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