Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2094 bp · LXL04_023928|LXL04_023928|OH1004|cDNA
ATGGCTTTGACGCCGGAAATCGAGGGGCAGAAACCGAAACATCGACCAATTATTCGTATTGGTATCTTCATCATTGCTCACAGCTTTCTAGTTAGTGTTATTTGTTGCATTGCTGGAGTTTTGGCTCTCTTACTGCTACCTGTTCTCGCGAAGAAAACCTACATTTCCGAAAATGCCCTAATGCCTGGTTCTGCCAGTCCCATGATCTCCGATCAAGATGTTTCTGGTGCAACCAGATTTATCAATGACCTAAATAGCCT...
2094 bp · LXL04_023928|LXL04_023928|OH1004|CDS
ATGGCTTTGACGCCGGAAATCGAGGGGCAGAAACCGAAACATCGACCAATTATTCGTATTGGTATCTTCATCATTGCTCACAGCTTTCTAGTTAGTGTTATTTGTTGCATTGCTGGAGTTTTGGCTCTCTTACTGCTACCTGTTCTCGCGAAGAAAACCTACATTTCCGAAAATGCCCTAATGCCTGGTTCTGCCAGTCCCATGATCTCCGATCAAGATGTTTCTGGTGCAACCAGATTTATCAATGACCTAAATAGCCT...
Protein
Download Protein FASTA697 aa · LXL04_023928|LXL04_023928|OH1004|PROTEIN
MALTPEIEGQKPKHRPIIRIGIFIIAHSFLVSVICCIAGVLALLLLPVLAKKTYISENALMPGSASPMISDQDVSGATRFINDLNSLKSKSQNTGIEIPRLIAHHMENMGGEVSYHKFQTQQNNFHPLHFFTSPDADTNFVNKTCESYAMNTIGIIRAPRGDGKESIVLVTPYNPLNLTQSETLSLGIAYTAFSLLTQVSWLAKDIIWLAADSQYGQYNSVASWLRDYHTPSFDSCHEVSDSFRRAGTMAAALVIRVADT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023928 |
|---|---|
| TK1151 ID | TkA01G466760 |
| OH-1004 ID | LXL04_023928 |
| Relationship / confidence | Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable |
| Protein identity (%) | 99.100 |
| Protein coverage (%) | TK1151 98.326 / OH-1004 92.683Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023928 |
|---|---|
| Location | Chr05:74590327-74593451 (+) |
| Description | Similar to Gpaa1: Glycosylphosphatidylinositol anchor attachment 1 protein |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006506 GPI anchor biosynthetic process Biological Process GO:0006621 protein retention in ER lumen Biological Process GO:0016255 attachment of GPI anchor to protein Biological Process GO:0180046 GPI anchored protein biosynthesis Biological Process GO:0005739 mitochondrion Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005813 centrosome Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0016020 membrane Cellular Component GO:0042765 GPI-anchor transamidase complex Cellular Component |
| KEGG gene cross-reference | hsa:8733 mmu:14731 sce:YLR088W spo:2543268 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04114.20Gaa1151-647 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_023928 | PF04114.20 | Gaa1 | 151 | 647 | 8.2e-97 | 326.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.