LXL04_023711 | RubberDandelionOmics

Gene overview

LXL04_023711

Reference: OH-1004 Chr: Chr05 Coordinates: 64536479-64539558 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1077 bp · LXL04_023711|LXL04_023711|OH1004|cDNA

ATGCAGCATCTACAAATGTCACTCACTGTATTTACCAAATCTTTGCTAAATATAGGAAAAACCTTTTCCCTACAACGCCCAATTACCGATCAGAGCCCTAACCCTAAAAACTCAACCTGGATGGAGAGAAACGAGGCGTGTAGTTTGAGGGCATTTGGTGGGTTCGAAATCGGACTTGGAATGGGAGTCGGAATGAAATTTGCTGGTGTCCAAGACAACAGCTACAAAAGTAAAACCAATAAACCTGCTGATCCTGCTAC...

CDS

Download CDS FASTA

1077 bp · LXL04_023711|LXL04_023711|OH1004|CDS

ATGCAGCATCTACAAATGTCACTCACTGTATTTACCAAATCTTTGCTAAATATAGGAAAAACCTTTTCCCTACAACGCCCAATTACCGATCAGAGCCCTAACCCTAAAAACTCAACCTGGATGGAGAGAAACGAGGCGTGTAGTTTGAGGGCATTTGGTGGGTTCGAAATCGGACTTGGAATGGGAGTCGGAATGAAATTTGCTGGTGTCCAAGACAACAGCTACAAAAGTAAAACCAATAAACCTGCTGATCCTGCTAC...

Protein

Download Protein FASTA

358 aa · LXL04_023711|LXL04_023711|OH1004|PROTEIN

MQHLQMSLTVFTKSLLNIGKTFSLQRPITDQSPNPKNSTWMERNEACSLRAFGGFEIGLGMGVGMKFAGVQDNSYKSKTNKPADPATAVVVDRDLVAAARFDFLKKKRMPRFRRGASTAVRSFRPFTSFANPLPANIVDQGRLTFLFSKKLQKSDVGVLKRIVLPKKPAETHLPALIAKEGIILEMDDMDSMHVWCFKFRFWPNNNSRMYVLEGTGEFAEEHELQVGDYIMLYRDSVNLNYVIQAVKAYEVEEYTKKEMK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023711`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023711

Location Chr05:64536479-64539558 (-)

Description Similar to FUS3: B3 domain-containing transcription factor FUS3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26790`	Transcription regulator involved in gene regulation during late embryogenesis.	The FUS3 transcription factor functions through the epidermal regulator TTG1 during embryogenesis in Arabidopsis.2004 · DOI: 10.1046/j.1365-313x.2003.01939.x The transcription factor FUSCA3 controls developmental timing in Arabidopsis through the hormones gibberellin and abscisic acid.2004 · DOI: 10.1016/j.devcel.2004.06.017 AKIN10 and FUSCA3 interact to control lateral organ development and phase transitions in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2011.04832.x Overlapping and distinct roles of AKIN10 and FUSCA3 in ABA and sugar signaling during seed germination.2012 · DOI: 10.4161/psb.21549
`At3g24650`	Participates in abscisic acid-regulated gene expression during seed development.	A pivotal role of the basic leucine zipper transcription factor bZIP53 in the regulation of Arabidopsis seed maturation gene expression based on heterodimerization and protein complex formation.2009 · DOI: 10.1105/tpc.108.062968 ABI3 controls embryo degreening through Mendel's I locus.2013 · DOI: 10.1073/pnas.1308114110

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0911700`	Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development.	No verified direct reference in this release
`Os01g0713600`	Transcription repressor involved in flowering time regulation.	Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter.2007 · DOI: 10.1016/j.bbrc.2007.06.041 Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa.2008 · DOI: 10.1016/j.jplph.2007.07.010

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023711 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0008284 positive regulation of cell population proliferation Biological Process

GO:0009657 plastid organization Biological Process

GO:0009733 response to auxin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009908 flower development Biological Process

GO:0010116 positive regulation of abscisic acid biosynthetic process Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

KEGG gene cross-reference

ath:AT3G24650

ath:AT3G26790

dosa:Os01g0713600

dosa:Os01g0911700

zma:542523

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.957

Rank 1 · LXL04_023711 · OH-1004

Cytoplasm0.099

Rank 2 · LXL04_023711 · OH-1004

Cell membrane0.034

Rank 3 · LXL04_023711 · OH-1004

Endoplasmic reticulum0.028

Rank 4 · LXL04_023711 · OH-1004

Plastid0.015

Rank 5 · LXL04_023711 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02362.27B3147-244 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023711	`PF02362.27`	B3	147	244	6.9e-13	49.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LW31`	Arabidopsis thaliana	B3 domain-containing transcription factor FUS3	41.429%	Swiss-Prot	moderate database homology
`Q01593`	Arabidopsis thaliana	B3 domain-containing transcription factor ABI3	53.704%	Swiss-Prot	weak database homology
`P37398`	Oryza sativa subsp. japonica	B3 domain-containing protein VP1	51.429%	Swiss-Prot	weak database homology
`A4LBC0`	Oryza sativa subsp. japonica	B3 domain-containing protein LFL1	46.377%	Swiss-Prot	weak database homology

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