LXL04_022200 | RubberDandelionOmics

Gene overview

LXL04_022200

Reference: OH-1004 Chr: Chr04 Coordinates: 145986483-145989764 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1284 bp · LXL04_022200|LXL04_022200|OH1004|cDNA

ATGGTGAAGGAGACAGAGTACTACGACGTCCTCGGGGTTAATCCCACGGCCACCGAATCTGAGATTAAGAAAGCTTATTACATCAAGGCACGACAAGTTCATCCAGATAAGAATCCAAATGATCCTCTTGCAGCTCAAAATTTTCAGGCAAAAAACTTTCATCCACATCTTATAATATGTTCATTCAAGAACTTTATACATTTTTCTGTCAAAATCGTTTAcaataaaataatttatattatATTACAGGTTTTAGGAGA...

CDS

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1284 bp · LXL04_022200|LXL04_022200|OH1004|CDS

ATGGTGAAGGAGACAGAGTACTACGACGTCCTCGGGGTTAATCCCACGGCCACCGAATCTGAGATTAAGAAAGCTTATTACATCAAGGCACGACAAGTTCATCCAGATAAGAATCCAAATGATCCTCTTGCAGCTCAAAATTTTCAGGCAAAAAACTTTCATCCACATCTTATAATATGTTCATTCAAGAACTTTATACATTTTTCTGTCAAAATCGTTTACAATAAAATAATTTATATTATATTACAGGTTTTAGGAGA...

Protein

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427 aa · LXL04_022200|LXL04_022200|OH1004|PROTEIN

MVKETEYYDVLGVNPTATESEIKKAYYIKARQVHPDKNPNDPLAAQNFQAKNFHPHLIICSFKNFIHFSVKIVYNKIIYIILQVLGEAYQVLSNPEQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEEYIGQLAMASMASLDIFTEGEQFDAKKLQEKMRIVQKEREEKLIQTLKDRLTPYVQGNKDEFVRNAEAEVLRLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFIAEWFRNKGHFIKSQVTAAT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022200`
TK1151 ID	TkA05G450320
OH-1004 ID	LXL04_022200
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	92.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022200

Location Chr04:145986483-145989764 (+)

Description Similar to ATJ10: Chaperone protein dnaJ 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76700`	Plays a continuous role in plant development probably in the structural organization of compartments.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022200 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0006626 protein targeting to mitochondrion Biological Process

GO:0016558 protein import into peroxisome matrix Biological Process

GO:0045040 protein insertion into mitochondrial outer membrane Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005933 cellular bud Cellular Component

GO:0071944 cell periphery Cellular Component

KEGG gene cross-reference

ath:AT1G76700

sce:YER048C

sce:YIR004W

spo:2540676

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.437

Rank 1 · LXL04_022200 · OH-1004

Nucleus0.240

Rank 2 · LXL04_022200 · OH-1004

Mitochondrion0.202

Rank 3 · LXL04_022200 · OH-1004

Endoplasmic reticulum0.165

Rank 4 · LXL04_022200 · OH-1004

Peroxisome0.090

Rank 5 · LXL04_022200 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00226.37DnaJ6-49 aa

PF14308.12DnaJ-X167-358 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022200	`PF00226.37`	DnaJ	6	49	6.3e-21	75.0
LXL04_022200	`PF14308.12`	DnaJ-X	167	358	1.1e-56	192.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GYX8`	Arabidopsis thaliana	Chaperone protein dnaJ 10	68.646%	Swiss-Prot	strong database homology

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