Gene Card
Gene overview
cDNA / CDS / Protein Sequences
990 bp · LXL04_022108|LXL04_022108|OH1004|cDNA
ATGGGCCCTCTTACGTTAGCTATTAACTCCAAGAACTCATCAATGTCATCATCAGATGTATCAAATGTGAAAGCACAAAGGTTGCAGATGATACCGAAAAAGTCTTTTGCATCAGTCAGCATAGGAGAAGACAAGCCATTTGATTTCTTAAAAACCTTATTTGAGGGTTTCATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATCGATACAATAAAGACAAGACTTCAGGCAGCTCGTGGTGG...
990 bp · LXL04_022108|LXL04_022108|OH1004|CDS
ATGGGCCCTCTTACGTTAGCTATTAACTCCAAGAACTCATCAATGTCATCATCAGATGTATCAAATGTGAAAGCACAAAGGTTGCAGATGATACCGAAAAAGTCTTTTGCATCAGTCAGCATAGGAGAAGACAAGCCATTTGATTTCTTAAAAACCTTATTTGAGGGTTTCATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATCGATACAATAAAGACAAGACTTCAGGCAGCTCGTGGTGG...
Protein
Download Protein FASTA329 aa · LXL04_022108|LXL04_022108|OH1004|PROTEIN
MGPLTLAINSKNSSMSSSDVSNVKAQRLQMIPKKSFASVSIGEDKPFDFLKTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAARGGGKIVLQGLYSGLAGNLVGVLPASALFVGVYEPTKQKLLKLFPENLSAVAHLTAGAIGGVAASLIRVPTEVVKQRLQTGQFSSATDAVRLIVAKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKLAARRDLHDPENAAIGAFAGAITGAITTPLDVIKTRLMIQGSGN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_022108 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_022108 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:144851888-144853889 (-) | |||||||||
| Description | Similar to SAMC1: S-adenosylmethionine carrier 1, chloroplastic/mitochondrial | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009658 chloroplast organization Biological Process GO:0015805 S-adenosyl-L-methionine transport Biological Process GO:1990543 mitochondrial S-adenosyl-L-methionine transmembrane transport Biological Process GO:0005739 mitochondrion Cellular Component GO:0005743 mitochondrial inner membrane Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0009536 plastid Cellular Component GO:0009941 chloroplast envelope Cellular Component GO:0031969 chloroplast membrane Cellular Component GO:0000095 S-adenosyl-L-methionine transmembrane transporter activity Molecular Function GO:0180003 S-adenosyl-L-methionine:S-adenosyl-L-homocysteine antiporter activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G34065 ath:AT4G39460 dre:560478 sce:YNL003C spo:2542695 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00153.33Mito_carr52-89 aaPF00153.33Mito_carr131-212 aaPF00153.33Mito_carr227-312 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_022108 | PF00153.33 | Mito_carr | 52 | 89 | 4.6e-61 | 203.3 |
| LXL04_022108 | PF00153.33 | Mito_carr | 131 | 212 | 4.6e-61 | 203.3 |
| LXL04_022108 | PF00153.33 | Mito_carr | 227 | 312 | 4.6e-61 | 203.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.