LXL04_022099 | RubberDandelionOmics

Gene overview

LXL04_022099

Reference: OH-1004 Chr: Chr04 Coordinates: 144583838-144594830 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3267 bp · LXL04_022099|LXL04_022099|OH1004|cDNA

ATGTATGCTGACTGCTCACAACCCACCAGTTTGCCCACCACCTTTTTAAGTCTGAGAGTAAGCACTTTAGATGGGATAAGCTCAATGATCACCCCAATTAACCGAGTCACGCCTATcCCGGTATGGTTTTTGCTAAAAAACCGAAAAATAGAACCAGAAAACAATCCGATTATGAGTAATTCCGATTTTGGTCCGGGTCTAGTTCCGGGTTTTCCCCGGTACCCGACAGTTAGCAGTTCCGAAAATTACGAGAATTGGAA...

CDS

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3267 bp · LXL04_022099|LXL04_022099|OH1004|CDS

ATGTATGCTGACTGCTCACAACCCACCAGTTTGCCCACCACCTTTTTAAGTCTGAGAGTAAGCACTTTAGATGGGATAAGCTCAATGATCACCCCAATTAACCGAGTCACGCCTATCCCGGTATGGTTTTTGCTAAAAAACCGAAAAATAGAACCAGAAAACAATCCGATTATGAGTAATTCCGATTTTGGTCCGGGTCTAGTTCCGGGTTTTCCCCGGTACCCGACAGTTAGCAGTTCCGAAAATTACGAGAATTGGAA...

Protein

Download Protein FASTA

1088 aa · LXL04_022099|LXL04_022099|OH1004|PROTEIN

MYADCSQPTSLPTTFLSLRVSTLDGISSMITPINRVTPIPVWFLLKNRKIEPENNPIMSNSDFGPGLVPGFPRYPTVSSSENYENWNRNCRRQFPNIENWNQTCLRQFQFRNHQFQFPVQARFRCKVIDSQIIVFVVRFSLPSLIMLDLDSILLNFLLHRLVDDEKHNSDLVDRVSEKMTDVRPQLLQKPESTTDACSDFENDGSDFERGLEEFMRGHLDDCLSFASCSSPHGDDDESETGDQLVRRRRRSDLEGDDLAE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022099`
TK1151 ID	TkA05G444700
OH-1004 ID	LXL04_022099
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 75.184 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022099

Location Chr04:144583838-144594830 (-)

Description Similar to neur: Protein neuralized

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g59560`	Possesses E3 ubiquitin-protein ligase activity.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_022099 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000209 protein polyubiquitination Biological Process

GO:0007219 Notch signaling pathway Biological Process

GO:0008104 intracellular protein localization Biological Process

GO:0008356 asymmetric cell division Biological Process

GO:0008593 regulation of Notch signaling pathway Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0030718 germ-line stem cell population maintenance Biological Process

GO:0045747 positive regulation of Notch signaling pathway Biological Process

GO:0045807 positive regulation of endocytosis Biological Process

GO:0070086 ubiquitin-dependent endocytosis Biological Process

GO:1904215 regulation of protein import into chloroplast stroma Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G59560

dme:Dmel_CG11988

hsa:54492

mmu:240055

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.464

Rank 1 · LXL04_022099 · OH-1004

Nucleus0.406

Rank 2 · LXL04_022099 · OH-1004

Mitochondrion0.107

Rank 3 · LXL04_022099 · OH-1004

Cell membrane0.099

Rank 4 · LXL04_022099 · OH-1004

Endoplasmic reticulum0.098

Rank 5 · LXL04_022099 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13920.13zf-C3HC4_3941-988 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022099	`PF13920.13`	zf-C3HC4_3	941	988	2e-11	44.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94HV7`	Arabidopsis thaliana	E3 ubiquitin-protein ligase SPL1	36.667%	Swiss-Prot	weak database homology

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