LXL04_022064 | RubberDandelionOmics

Gene overview

LXL04_022064

Reference: OH-1004 Chr: Chr04 Coordinates: 144163498-144167612 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1398 bp · LXL04_022064|LXL04_022064|OH1004|cDNA

ATGAATTCATCATCATCTCTCTTTGTTAATTCCTATTTGTGTTTGGAGCCGTGCAGTTCGTGGATTTGCCCCAAATTTGAGCACAGATCGCGAAAGGCAATGAAGACCATGAGATGTTTCTCCTTCTCCCATAGAGACAAAAGCAAtggtacaaaaactacaaaATCTACCTTCACCCATTCATCACCATCCATATCCAACGGCCAAGATGAGAGAAAATCAAGCTCAGGTTTTACTTCCCTCGACGCCTCTGACGTCAG...

CDS

Download CDS FASTA

1398 bp · LXL04_022064|LXL04_022064|OH1004|CDS

ATGAATTCATCATCATCTCTCTTTGTTAATTCCTATTTGTGTTTGGAGCCGTGCAGTTCGTGGATTTGCCCCAAATTTGAGCACAGATCGCGAAAGGCAATGAAGACCATGAGATGTTTCTCCTTCTCCCATAGAGACAAAAGCAATGGTACAAAAACTACAAAATCTACCTTCACCCATTCATCACCATCCATATCCAACGGCCAAGATGAGAGAAAATCAAGCTCAGGTTTTACTTCCCTCGACGCCTCTGACGTCAG...

Protein

Download Protein FASTA

465 aa · LXL04_022064|LXL04_022064|OH1004|PROTEIN

MNSSSSLFVNSYLCLEPCSSWICPKFEHRSRKAMKTMRCFSFSHRDKSNGTKTTKSTFTHSSPSISNGQDERKSSSGFTSLDASDVSNESSTRVSFTSLTQRPSRNSNNNIRIFTFSELKSATRNFSRALIIGEGGFGCVYRAVLRDGSNKKIDCAVKQLGRRGLQGHKEWITEVNVLGFVDHPNLVKLIGYCAEDDERGIQRLLVYEYMPNRSVQDHLSTRVQTPIPWLTRLKIAQDSARGLAYLHEEMEFQIIFRDFK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022064`
TK1151 ID	TkA05G443380
OH-1004 ID	LXL04_022064
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.900
Protein coverage (%)	TK1151 100.000 / OH-1004 92.473 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022064

Location Chr04:144163498-144167612 (+)

Description Similar to PCRK1: Serine/threonine-protein kinase PCRK1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g09830`	Involved in the activation of early immune responses.	The receptor-like cytoplasmic kinase PCRK1 contributes to pattern-triggered immunity against Pseudomonas syringae in Arabidopsis thaliana.2015 · DOI: 10.1111/nph.13345 Functional characterization of PCRK1, a putative protein kinase with a role in immunity.2015 · DOI: 10.1080/15592324.2015.1063759
`At5g03320`	Functions redundantly with PCRK1 in basal resistance against bacterial pathogens and in regulation of plant immunity.	No verified direct reference in this release
`At5g47070`	May be involved in plant defense signaling.	No verified direct reference in this release
`At5g15080`	Involved in chitin-triggered immune signaling and is required for reactive oxygen species (ROS) production.	Tyrosine phosphorylation of the lectin receptor-like kinase LORE regulates plant immunity.2020 · DOI: 10.15252/embj.2019102856 Receptor-like cytoplasmic kinases PBL34/35/36 are required for CLE peptide-mediated signaling to maintain shoot apical meristem and root apical meristem homeostasis in Arabidopsis.2022 · DOI: 10.1093/plcell/koab315
`At3g28690`	Involved in chitin-triggered immune signaling and is required for reactive oxygen species (ROS) production.	Tyrosine phosphorylation of the lectin receptor-like kinase LORE regulates plant immunity.2020 · DOI: 10.15252/embj.2019102856 Receptor-like cytoplasmic kinases PBL34/35/36 are required for CLE peptide-mediated signaling to maintain shoot apical meristem and root apical meristem homeostasis in Arabidopsis.2022 · DOI: 10.1093/plcell/koab315

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022064 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002221 pattern recognition receptor signaling pathway Biological Process

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0009617 response to bacterium Biological Process

GO:0010073 meristem maintenance Biological Process

GO:0010078 maintenance of root meristem identity Biological Process

GO:0010088 phloem development Biological Process

GO:0010492 maintenance of shoot apical meristem identity Biological Process

GO:0031663 lipopolysaccharide-mediated signaling pathway Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045087 innate immune response Biological Process

KEGG gene cross-reference

ath:AT3G09830

ath:AT3G28690

ath:AT5G03320

ath:AT5G15080

ath:AT5G47070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.664

Rank 1 · LXL04_022064 · OH-1004

Nucleus0.238

Rank 2 · LXL04_022064 · OH-1004

Cytoplasm0.224

Rank 3 · LXL04_022064 · OH-1004

Endoplasmic reticulum0.046

Rank 4 · LXL04_022064 · OH-1004

Golgi apparatus0.028

Rank 5 · LXL04_022064 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase131-404 aa

PF07714.24PK_Tyr_Ser-Thr132-404 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022064	`PF00069.32`	Pkinase	131	404	1.5e-46	159.7
LXL04_022064	`PF07714.24`	PK_Tyr_Ser-Thr	132	404	3.2e-46	158.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SF86`	Arabidopsis thaliana	Serine/threonine-protein kinase PCRK1	67.105%	Swiss-Prot	strong database homology
`Q9LZF8`	Arabidopsis thaliana	Serine/threonine-protein kinase PCRK2	60.739%	Swiss-Prot	strong database homology
`Q9LTC0`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL19	46.966%	Swiss-Prot	moderate database homology
`Q9LFP7`	Arabidopsis thaliana	Serine/threonine-protein kinase PBL34	49.589%	Swiss-Prot	moderate database homology
`F4J0D2`	Arabidopsis thaliana	Serine/threonine-protein kinase PBL36	54.426%	Swiss-Prot	moderate database homology

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