LXL04_022004 | RubberDandelionOmics

Gene overview

LXL04_022004

Reference: OH-1004 Chr: Chr04 Coordinates: 142301238-142303436 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2199 bp · LXL04_022004|LXL04_022004|OH1004|cDNA

ATGACTCGTGTAATGGCGGAGAGTGAAATGGATAGCATGGCGTTTTACCAGCGAGGACAGGTGGCGACCTCTCCGTCTCTCGGAGAGCTTCTTAAGTTCGTTGGAGACATAAGGAAGGAGGCGAATGGTGATGAAACTCCGGCACATCGTGTTTTGGAGATGAGTGAAACAAGTAACGAGCCTAGATCGTTGCCGTTTGTTTTGAAGTTTAATAATCTGACTTACAGTGTGAAAGTTCGGAGAAAGATGGGGATGCCTTC...

CDS

Download CDS FASTA

2199 bp · LXL04_022004|LXL04_022004|OH1004|CDS

ATGACTCGTGTAATGGCGGAGAGTGAAATGGATAGCATGGCGTTTTACCAGCGAGGACAGGTGGCGACCTCTCCGTCTCTCGGAGAGCTTCTTAAGTTCGTTGGAGACATAAGGAAGGAGGCGAATGGTGATGAAACTCCGGCACATCGTGTTTTGGAGATGAGTGAAACAAGTAACGAGCCTAGATCGTTGCCGTTTGTTTTGAAGTTTAATAATCTGACTTACAGTGTGAAAGTTCGGAGAAAGATGGGGATGCCTTC...

Protein

Download Protein FASTA

732 aa · LXL04_022004|LXL04_022004|OH1004|PROTEIN

MTRVMAESEMDSMAFYQRGQVATSPSLGELLKFVGDIRKEANGDETPAHRVLEMSETSNEPRSLPFVLKFNNLTYSVKVRRKMGMPSLFGGRERLGDSSVGNEHMFSRSKVLLNDISGEARDGELVAVLGASGSGKSTLIDALANRIAKGSLKGSVTLNGEQLESRLLKVISAYVMQDDLLFPMLTVEETLMYAAEFRLPRTLSKSKKKLRVQALIDQLGIRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIILFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022004`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022004

Location Chr04:142301238-142303436 (-)

Description Similar to ABCG1: ABC transporter G family member 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39350`	ABC transporter G family member 1.	No verified direct reference in this release
`At3g55090`	ABC transporter G family member 16.	No verified direct reference in this release
`At5g13580`	ABC transporter G family member 6.	No verified direct reference in this release
`At2g37360`	ABC transporter G family member 2.	No verified direct reference in this release
`At3g53510`	ABC transporter G family member 20.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022004 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009624 response to nematode Biological Process

GO:0010208 pollen wall assembly Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

GO:0042626 ATPase-coupled transmembrane transporter activity Molecular Function

GO:0140359 ABC-type transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G37360

ath:AT2G39350

ath:AT3G53510

ath:AT3G55090

ath:AT5G13580

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.594

Rank 1 · LXL04_022004 · OH-1004

Lysosome / Vacuole0.156

Rank 2 · LXL04_022004 · OH-1004

Endoplasmic reticulum0.093

Rank 3 · LXL04_022004 · OH-1004

Cytoplasm0.086

Rank 4 · LXL04_022004 · OH-1004

Golgi apparatus0.066

Rank 5 · LXL04_022004 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00005.34ABC_tran113-265 aa

PF19055.7ABC2_membrane_7294-356 aa

PF01061.30ABC2_membrane428-636 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022004	`PF00005.34`	ABC_tran	113	265	3.1e-26	93.3
LXL04_022004	`PF19055.7`	ABC2_membrane_7	294	356	2.9e-06	27.1
LXL04_022004	`PF01061.30`	ABC2_membrane	428	636	9.1e-49	166.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80946`	Arabidopsis thaliana	ABC transporter G family member 1	72.005%	Swiss-Prot	strong database homology
`Q9M2V7`	Arabidopsis thaliana	ABC transporter G family member 16	71.123%	Swiss-Prot	strong database homology
`Q9FNB5`	Arabidopsis thaliana	ABC transporter G family member 6	71.833%	Swiss-Prot	strong database homology
`Q9ZUT0`	Arabidopsis thaliana	ABC transporter G family member 2	68.942%	Swiss-Prot	strong database homology
`Q9LFG8`	Arabidopsis thaliana	ABC transporter G family member 20	70.759%	Swiss-Prot	strong database homology

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