LXL04_019072 | RubberDandelionOmics

Gene overview

LXL04_019072

Reference: OH-1004 Chr: Chr04 Coordinates: 23130491-23133791 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1047 bp · LXL04_019072|LXL04_019072|OH1004|cDNA

ATGTATTTCAACCTCTCCGTCGATCTATACTATCTTTTAGGGTTTTTGGTATTTGAACGCCTTCATATTTATTCATCCTTCGTTGCCTCTGTAATCTCTCCTTCCTCCACCAACGCGTTCTCCCGGGAAGCAATCATGGTCTTCGTCAAATCACaaaagtcaaggtcctatttCAAAAGGTTTCAGGTCAAATTCAAGAGAAGGAGAGAGGGAAAGACTGATTACCGTGCAAGAATCCGTCTCATCAACCAAGACAAAAA...

CDS

Download CDS FASTA

1047 bp · LXL04_019072|LXL04_019072|OH1004|CDS

ATGTATTTCAACCTCTCCGTCGATCTATACTATCTTTTAGGGTTTTTGGTATTTGAACGCCTTCATATTTATTCATCCTTCGTTGCCTCTGTAATCTCTCCTTCCTCCACCAACGCGTTCTCCCGGGAAGCAATCATGGTCTTCGTCAAATCACAAAAGTCAAGGTCCTATTTCAAAAGGTTTCAGGTCAAATTCAAGAGAAGGAGAGAGGGAAAGACTGATTACCGTGCAAGAATCCGTCTCATCAACCAAGACAAAAA...

Protein

Download Protein FASTA

348 aa · LXL04_019072|LXL04_019072|OH1004|PROTEIN

MYFNLSVDLYYLLGFLVFERLHIYSSFVASVISPSSTNAFSREAIMVFVKSQKSRSYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRYVVRFTNKDIIAQIVSASIAGDMILASAYAHELPHYGLKVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGNVEATGEDYSVEPAESRRPFRALLDVGLLRTTTGNRVFGALKGALDGGLDIPHSEKRFAGFNKDGKQLDADVHRKYIYGGHVASYMKTLMEDEP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019072`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019072

Location Chr04:23130491-23133791 (-)

Description Similar to RPL5: 60S ribosomal protein L5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g25520`	Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.	Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins.2008 · DOI: 10.1242/dev.016469 Coordination of cell proliferation and cell expansion mediated by ribosome-related processes in the leaves of Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2009.03886.x
`At5g39740`	Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.	Coordination of cell proliferation and cell expansion mediated by ribosome-related processes in the leaves of Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2009.03886.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0896700`	Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.	No verified direct reference in this release
`UniProt: A2WXX3`	Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019072 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000027 ribosomal large subunit assembly Biological Process

GO:0006412 translation Biological Process

GO:0006913 nucleocytoplasmic transport Biological Process

GO:0009955 adaxial/abaxial pattern specification Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0010015 root morphogenesis Biological Process

GO:0051301 cell division Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G25520

ath:AT5G39740

csv:101216379

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.469

Rank 1 · LXL04_019072 · OH-1004

Mitochondrion0.340

Rank 2 · LXL04_019072 · OH-1004

Nucleus0.205

Rank 3 · LXL04_019072 · OH-1004

Peroxisome0.043

Rank 4 · LXL04_019072 · OH-1004

Plastid0.035

Rank 5 · LXL04_019072 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17144.10Ribosomal_L5e59-220 aa

PF14204.12Ribosomal_L18_c280-334 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019072	`PF17144.10`	Ribosomal_L5e	59	220	9.3e-83	276.9
LXL04_019072	`PF14204.12`	Ribosomal_L18_c	280	334	1.6e-17	64.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LBI1`	Arabidopsis thaliana	Large ribosomal subunit protein uL18z	81.849%	Swiss-Prot	strong database homology
`P49227`	Arabidopsis thaliana	Large ribosomal subunit protein uL18y	81.507%	Swiss-Prot	strong database homology
`Q8L4L4`	Oryza sativa subsp. japonica	Large ribosomal subunit protein uL18y	77.320%	Swiss-Prot	strong database homology
`A2WXX3`	Oryza sativa subsp. indica	Large ribosomal subunit protein uL18	76.976%	Swiss-Prot	strong database homology

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