LXL04_019012 | RubberDandelionOmics

Gene overview

LXL04_019012

Reference: OH-1004 Chr: Chr04 Coordinates: 22037533-22047851 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3915 bp · LXL04_019012|LXL04_019012|OH1004|cDNA

ATGTATTCATTATCCAAAACATACGTTCTCCTCTTCCTTCTTCAATGCTTTGCATATTCCGGATTTGCGGGTCGCCGAGACCGCCTAGCTGGTGGCGCACACCGTAACAAACATGTCAAGGATGGTGGAGCCGATTACACAAAGCCAGAAATCTCAACCAGATTCAGGGGATCATGGGTAATCGATAATCCAAATGCAGGTGTGGCTTCCATGCAACTACAATTGATGCCTAACGACGTGGTGGTTTGGTTTGATAGCAC...

CDS

Download CDS FASTA

3915 bp · LXL04_019012|LXL04_019012|OH1004|CDS

ATGTATTCATTATCCAAAACATACGTTCTCCTCTTCCTTCTTCAATGCTTTGCATATTCCGGATTTGCGGGTCGCCGAGACCGCCTAGCTGGTGGCGCACACCGTAACAAACATGTCAAGGATGGTGGAGCCGATTACACAAAGCCAGAAATCTCAACCAGATTCAGGGGATCATGGGTAATCGATAATCCAAATGCAGGTGTGGCTTCCATGCAACTACAATTGATGCCTAACGACGTGGTGGTTTGGTTTGATAGCAC...

Protein

Download Protein FASTA

1304 aa · LXL04_019012|LXL04_019012|OH1004|PROTEIN

MYSLSKTYVLLFLLQCFAYSGFAGRRDRLAGGAHRNKHVKDGGADYTKPEISTRFRGSWVIDNPNAGVASMQLQLMPNDVVVWFDSTSLGPSDRKLDPPGNCPPNPDLKGQPDCFAHAIGYNWKNSTYRTIVLAGEPWCSSGNLWPNGNLVATGGTFSGVKAIRMLPKDDPKANFIEKRDALADFRWYASNQVLEDGSAVVVGGRDSFSIEVVPPTLNFKNKKIDFPFLKQTCTPPKGPNRFIENNLYPFVYLLPDGNIF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019012`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019012

Location Chr04:22037533-22047851 (+)

Description Similar to Putative aldehyde oxidase Art an 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67290`	Catalyzes the oxidation of aldehydes to the corresponding carboxylate by coupling the reaction to the reduction of dioxygen to hydrogen peroxide.	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana.2011 · DOI: 10.1105/tpc.110.082651

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_019012 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004031 aldehyde oxidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G67290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.753

Rank 1 · LXL04_019012 · OH-1004

Cytoplasm0.117

Rank 2 · LXL04_019012 · OH-1004

Lysosome / Vacuole0.064

Rank 3 · LXL04_019012 · OH-1004

Endoplasmic reticulum0.044

Rank 4 · LXL04_019012 · OH-1004

Cell membrane0.041

Rank 5 · LXL04_019012 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07250.18Glyoxal_oxid_N71-472 aa

PF09118.18GO-like_E_set481-566 aa

PF07250.18Glyoxal_oxid_N723-1124 aa

PF09118.18GO-like_E_set1133-1235 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019012	`PF07250.18`	Glyoxal_oxid_N	71	472	1.4e-269	893.8
LXL04_019012	`PF09118.18`	GO-like_E_set	481	566	5.1e-37	126.9
LXL04_019012	`PF07250.18`	Glyoxal_oxid_N	723	1124	1.4e-269	893.8
LXL04_019012	`PF09118.18`	GO-like_E_set	1133	1235	5.1e-37	126.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FYG4`	Arabidopsis thaliana	Aldehyde oxidase GLOX1	43.309%	Swiss-Prot	weak database homology

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