LXL04_018268 | RubberDandelionOmics

Gene overview

LXL04_018268

Reference: OH-1004 Chr: Chr04 Coordinates: 10096666-10098076 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

702 bp · LXL04_018268|LXL04_018268|OH1004|cDNA

ATGCATGGAAAGGAAGGAAGAATAGAATTCTCTAATGGTGCATTGCTACGTTATAAGGAATTTATTCGTGCTTATGGAAGAGAAAACGAAACTTTTGGTCACAAGACGGTGTACATGCATGGATGTTTTATGCGACAGATTGGGTATATCTTGATTTATGTGGGCCTCACTTTTGAGAATCGTTTGGCAAGTATATATAAACCTTTCAAGTTTCATTCTAGAGAACCACAAACTAACATAAACCATCTCTCTCAAGTTTT...

CDS

Download CDS FASTA

702 bp · LXL04_018268|LXL04_018268|OH1004|CDS

ATGCATGGAAAGGAAGGAAGAATAGAATTCTCTAATGGTGCATTGCTACGTTATAAGGAATTTATTCGTGCTTATGGAAGAGAAAACGAAACTTTTGGTCACAAGACGGTGTACATGCATGGATGTTTTATGCGACAGATTGGGTATATCTTGATTTATGTGGGCCTCACTTTTGAGAATCGTTTGGCAAGTATATATAAACCTTTCAAGTTTCATTCTAGAGAACCACAAACTAACATAAACCATCTCTCTCAAGTTTT...

Protein

Download Protein FASTA

233 aa · LXL04_018268|LXL04_018268|OH1004|PROTEIN

MHGKEGRIEFSNGALLRYKEFIRAYGRENETFGHKTVYMHGCFMRQIGYILIYVGLTFENRLASIYKPFKFHSREPQTNINHLSQVLYHLFQVFNLQQEKMSSGDWMCGACQHINFKKRDACQRCQCPKFATPSEMSGYGIDRTEVLAGDWYCSTFNCGAHNYASRTVCYRCGVLKDYTTAAMMAASTAGYYAHDPNALPGWKSGDWVCNRLGCGVHNYASRMECYKCKTSRE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018268`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_018268`
Location	Chr04:10096666-10098076 (-)
Description	Similar to ZRANB2: Zinc finger Ran-binding domain-containing protein 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018268` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006396 RNA processing Biological Process GO:0031445 regulation of heterochromatin formation Biological Process GO:0071502 cellular response to temperature stimulus Biological Process GO:0005634 nucleus Cellular Component GO:0005694 chromosome Cellular Component GO:0005737 cytoplasm Cellular Component GO:0010494 cytoplasmic stress granule Cellular Component GO:0140453 protein aggregate center Cellular Component GO:0000175 3'-5'-RNA exonuclease activity Molecular Function GO:0001530 lipopolysaccharide binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference	afm:AFUA_5G02160 gga:424717 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.502

Rank 1 · LXL04_018268 · OH-1004

Cytoplasm0.456

Rank 2 · LXL04_018268 · OH-1004

Mitochondrion0.079

Rank 3 · LXL04_018268 · OH-1004

Cell membrane0.057

Rank 4 · LXL04_018268 · OH-1004

Endoplasmic reticulum0.047

Rank 5 · LXL04_018268 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00641.24Zn_ribbon_RanBP148-173 aa

PF00641.24Zn_ribbon_RanBP203-233 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018268	`PF00641.24`	Zn_ribbon_RanBP	148	173	8.6e-14	51.2
LXL04_018268	`PF00641.24`	Zn_ribbon_RanBP	203	233	8.6e-14	51.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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