Gene Card
Gene overview
cDNA / CDS / Protein Sequences
873 bp · LXL04_017830|LXL04_017830|OH1004|cDNA
ATGGTGTTCATGGTCGAAACACACTACTGGAAAACGCCAAATAGAGTACAGGAAATCAACTACGGTCGACAGGTTTCAAGAGAAGGAAGTACGGTTTCAACTCCTTCTCAAATAAGGGAATTACCATTTTCAAGAGAACTGTACACATGGGGCTCCAATGAAAATGGGTGTCTTGGTATTGGCACGACCCCAGCCAGGGGCTccgccccttggaccccgccggAGGCTGCCCCCCGGACCATCCTTACCATCCTTAAACA...
873 bp · LXL04_017830|LXL04_017830|OH1004|CDS
ATGGTGTTCATGGTCGAAACACACTACTGGAAAACGCCAAATAGAGTACAGGAAATCAACTACGGTCGACAGGTTTCAAGAGAAGGAAGTACGGTTTCAACTCCTTCTCAAATAAGGGAATTACCATTTTCAAGAGAACTGTACACATGGGGCTCCAATGAAAATGGGTGTCTTGGTATTGGCACGACCCCAGCCAGGGGCTCCGCCCCTTGGACCCCGCCGGAGGCTGCCCCCCGGACCATCCTTACCATCCTTAAACA...
Protein
Download Protein FASTA290 aa · LXL04_017830|LXL04_017830|OH1004|PROTEIN
MVFMVETHYWKTPNRVQEINYGRQVSREGSTVSTPSQIRELPFSRELYTWGSNENGCLGIGTTPARGSAPWTPPEAAPRTILTILKQSIVAVNGNIPDTSVKIQQQQHQQPPQLQLQLATLNSAITSCTQINRSYAQNGMLGMHQAMQSALAGNPGSLMDGKRNKQDGSEAGDKPLGDREFPIAGLHDRILEESKKRGRRNACGLLKEIEGIERSARRGEEQTLRSMAKSFMKSKPAVKSFMKSGYDRLRFIICPSRFPL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_017830 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_017830 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:1938212-1942154 (+) | |||||||||
| Description | Protein of unknown function | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006887 exocytosis Biological Process GO:0006904 vesicle docking involved in exocytosis Biological Process GO:0009409 response to cold Biological Process GO:0009555 pollen development Biological Process GO:0009631 cold acclimation Biological Process GO:0009734 auxin-activated signaling pathway Biological Process GO:0009741 response to brassinosteroid Biological Process GO:0009742 brassinosteroid mediated signaling pathway Biological Process GO:0016192 vesicle-mediated transport Biological Process GO:0019428 allantoin biosynthetic process Biological Process GO:0040008 regulation of growth Biological Process GO:0080001 mucilage extrusion from seed coat Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G18740 ath:AT1G74450 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF05633.17ROH1-like182-218 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_017830 | PF05633.17 | ROH1-like | 182 | 218 | 4.7e-07 | 29.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.